41 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ccnc	cyclin-C isoform X1; Belongs to the cyclin family. (283 aa)
	ccnk	cyclin-K; Belongs to the cyclin family. (490 aa)
	wwtr1	WW domain-containing transcription regulator protein 1 isoform X1. (454 aa)
	LOC108268108	Transcription factor E2F5-like. (374 aa)
	rbl1	Retinoblastoma-like protein 1. (1048 aa)
	furin	Furin-1; Belongs to the peptidase S8 family. (828 aa)
	LOC108267606	Mothers against decapentaplegic homolog. (574 aa)
	smad4	Mothers against decapentaplegic homolog. (546 aa)
	uba52	ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
	kxd1	kxDL motif-containing protein 1 isoform X2. (187 aa)
	LOC108261863	Transcription factor E2F5-like. (127 aa)
	cdk8	Cyclin-dependent kinase 8; Belongs to the protein kinase superfamily. (470 aa)
	tfdp1	Transcription factor. (389 aa)
	LOC108261791	Transcription factor E2F5-like. (135 aa)
	LOC108254892	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily. (479 aa)
	e2f4	Transcription factor E2F4. (390 aa)
	ccnt2	cyclin-T2; Belongs to the cyclin family. (558 aa)
	smad7	Mothers against decapentaplegic homolog. (386 aa)
	rps27a	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
	LOC108256206	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (396 aa)
	men1	Menin. (616 aa)
	LOC108273360	Mothers against decapentaplegic homolog. (561 aa)
	ccnq	Cyclin-related protein FAM58A isoform X1; Belongs to the cyclin family. (248 aa)
	LOC108259569	Mothers against decapentaplegic homolog. (425 aa)
	mapk1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (375 aa)
	LOC108277808	Transcription factor. (445 aa)
	LOC108279315	Cyclin-dependent kinase 9 isoform X1; Belongs to the protein kinase superfamily. (394 aa)
	LOC108279348	Cyclin-dependent kinase 9-like; Belongs to the protein kinase superfamily. (394 aa)
	LOC108272820	Traf2 and NCK-interacting protein kinase-like. (330 aa)
	LOC108264458	Mothers against decapentaplegic homolog. (424 aa)
	LOC108266529	cyclin-T2-like isoform X5; Belongs to the cyclin family. (617 aa)
	ENSIPUP00000033033	annotation not available (184 aa)
	ccnt1	cyclin-T1 isoform X2; Belongs to the cyclin family. (495 aa)
	LOC108270701	Furin-1-like; Belongs to the peptidase S8 family. (812 aa)
	rnf111	E3 ubiquitin-protein ligase Arkadia isoform X1. (985 aa)
	LOC108266453	Transcription factor. (407 aa)
	LOC108255640	Mothers against decapentaplegic homolog. (523 aa)
	junb	Transcription factor jun-B. (323 aa)
	sp1	Transcription factor Sp1. (621 aa)
	smad2	Mothers against decapentaplegic homolog. (467 aa)
	ENSIPUP00000037178	annotation not available (306 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000033033	LOC108254892	ENSIPUP00000033033	ENSIPUP00000017331	annotation not available	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily.	0.558
ENSIPUP00000033033	LOC108279315	ENSIPUP00000033033	ENSIPUP00000031655	annotation not available	Cyclin-dependent kinase 9 isoform X1; Belongs to the protein kinase superfamily.	0.853
ENSIPUP00000033033	LOC108279348	ENSIPUP00000033033	ENSIPUP00000031698	annotation not available	Cyclin-dependent kinase 9-like; Belongs to the protein kinase superfamily.	0.853
ENSIPUP00000033033	ccnc	ENSIPUP00000033033	ENSIPUP00000025904	annotation not available	cyclin-C isoform X1; Belongs to the cyclin family.	0.642
ENSIPUP00000033033	ccnk	ENSIPUP00000033033	ENSIPUP00000003202	annotation not available	cyclin-K; Belongs to the cyclin family.	0.591
ENSIPUP00000033033	ccnt1	ENSIPUP00000033033	ENSIPUP00000033062	annotation not available	cyclin-T1 isoform X2; Belongs to the cyclin family.	0.897
ENSIPUP00000033033	cdk8	ENSIPUP00000033033	ENSIPUP00000015529	annotation not available	Cyclin-dependent kinase 8; Belongs to the protein kinase superfamily.	0.558
ENSIPUP00000033033	sp1	ENSIPUP00000033033	ENSIPUP00000036790	annotation not available	Transcription factor Sp1.	0.523
ENSIPUP00000037178	LOC108261791	ENSIPUP00000037178	ENSIPUP00000016552	annotation not available	Transcription factor E2F5-like.	0.786
ENSIPUP00000037178	LOC108261863	ENSIPUP00000037178	ENSIPUP00000014280	annotation not available	Transcription factor E2F5-like.	0.786
ENSIPUP00000037178	LOC108268108	ENSIPUP00000037178	ENSIPUP00000004504	annotation not available	Transcription factor E2F5-like.	0.786
ENSIPUP00000037178	e2f4	ENSIPUP00000037178	ENSIPUP00000018270	annotation not available	Transcription factor E2F4.	0.786
ENSIPUP00000037178	rbl1	ENSIPUP00000037178	ENSIPUP00000005452	annotation not available	Retinoblastoma-like protein 1.	0.832
LOC108254892	ENSIPUP00000033033	ENSIPUP00000017331	ENSIPUP00000033033	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily.	annotation not available	0.558
LOC108254892	LOC108255640	ENSIPUP00000017331	ENSIPUP00000035179	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily.	Mothers against decapentaplegic homolog.	0.435
LOC108254892	LOC108266529	ENSIPUP00000017331	ENSIPUP00000002890	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily.	cyclin-T2-like isoform X5; Belongs to the cyclin family.	0.558
LOC108254892	LOC108267606	ENSIPUP00000017331	ENSIPUP00000006258	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily.	Mothers against decapentaplegic homolog.	0.435
LOC108254892	LOC108273360	ENSIPUP00000017331	ENSIPUP00000027339	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily.	Mothers against decapentaplegic homolog.	0.435
LOC108254892	LOC108279315	ENSIPUP00000017331	ENSIPUP00000031655	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 9 isoform X1; Belongs to the protein kinase superfamily.	0.584
LOC108254892	LOC108279348	ENSIPUP00000017331	ENSIPUP00000031698	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 9-like; Belongs to the protein kinase superfamily.	0.584