62 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108256175	Inhibitor of nuclear factor kappa-B kinase subunit alpha-like isoform X2. (388 aa)
	nup133	Nuclear pore complex protein Nup133. (1139 aa)
	lmna	Lamin; Belongs to the intermediate filament family. (661 aa)
	nup160	Nuclear pore complex protein Nup160. (1365 aa)
	nup188	Nucleoporin NUP188 homolog. (1668 aa)
	nek9	Serine/threonine-protein kinase Nek9. (995 aa)
	tpr	Nucleoprotein TPR isoform X1. (2335 aa)
	LOC108258960	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (656 aa)
	LOC108260780	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (672 aa)
	LOC108270532	CTD small phosphatase-like protein 2 isoform X2. (369 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (311 aa)
	lmnb1	lamin-B1 isoform X2; Belongs to the intermediate filament family. (618 aa)
	lpin2	Phosphatidate phosphatase LPIN2 isoform X1. (893 aa)
	nup155	Nuclear pore complex protein Nup155 isoform X1. (1391 aa)
	Ctdnep1	CTD nuclear envelope phosphatase 1. (163 aa)
	lmnb2	lamin-B2; Belongs to the intermediate filament family. (586 aa)
	aaas	Aladin isoform X2. (511 aa)
	ncoa5	Nuclear receptor coactivator 5 isoform X1. (693 aa)
	nup37	Nucleoporin Nup37. (326 aa)
	LOC108257839	Nucleoprotein TPR-like isoform X1. (2346 aa)
	LOC108270534	lamin-L(III)-like isoform X1; Belongs to the intermediate filament family. (600 aa)
	ccnb2	G2/mitotic-specific cyclin-B2 isoform X1; Belongs to the cyclin family. (398 aa)
	nup88	Nuclear pore complex protein Nup88. (721 aa)
	nup42	Nucleoporin-like protein 2. (504 aa)
	LOC108267136	G2/mitotic-specific cyclin-B3-like isoform X1; Belongs to the cyclin family. (432 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (648 aa)
	wdr41	WD repeat-containing protein 41. (451 aa)
	LOC108260181	CTD nuclear envelope phosphatase 1A. (245 aa)
	LOC108275364	CTD small phosphatase-like protein 2-A. (470 aa)
	nup214	Nuclear pore complex protein Nup214 isoform X1. (1972 aa)
	LOC108264381	Nuclear receptor coactivator 5-like. (515 aa)
	LOC108271928	Phosphatidate phosphatase LPIN2-like isoform X1. (1067 aa)
	LOC108261082	RANBP2-like and GRIP domain-containing protein 5/6. (3016 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	rae1	mRNA export factor isoform X1. (368 aa)
	nek7	Serine/threonine-protein kinase Nek7 isoform X2; Belongs to the protein kinase superfamily. (301 aa)
	LOC108275784	Lamina-associated polypeptide 2-like isoform X1. (193 aa)
	LOC108269007	Type III intermediate filament-like isoform X1. (375 aa)
	ccnb1	G2/mitotic-specific cyclin-B1 isoform X2; Belongs to the cyclin family. (401 aa)
	nup210	Nuclear pore membrane glycoprotein 210. (1883 aa)
	lemd3	Inner nuclear membrane protein Man1. (865 aa)
	cnep1r1	Nuclear envelope phosphatase-regulatory subunit 1. (125 aa)
	nup58	Nucleoporin p58/p45 isoform X1. (556 aa)
	nup62	Nuclear pore glycoprotein p62. (512 aa)
	cdk1	Cyclin-dependent kinase 1 isoform X1; Belongs to the protein kinase superfamily. (302 aa)
	ctdspl2	CTD small phosphatase-like protein 2 isoform X2. (449 aa)
	prkca	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (668 aa)
	nup54	Nucleoporin p54 isoform X1. (561 aa)
	nup205	Nuclear pore complex protein Nup205. (1955 aa)
	nup153	Nuclear pore complex protein Nup153 isoform X1. (1460 aa)
	lpin1	Phosphatidate phosphatase LPIN1 isoform X1. (921 aa)
	ENSIPUP00000019829	annotation not available (164 aa)
	ENSIPUP00000019732	annotation not available (130 aa)
	LOC108275291	Phosphatidate phosphatase LPIN1-like. (775 aa)
	LOC108278678	G2/mitotic-specific cyclin-B3-like; Belongs to the cyclin family. (414 aa)
	nup50	Nuclear pore complex protein Nup50 isoform X1. (466 aa)
	seh1l	LOW QUALITY PROTEIN: nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (356 aa)
	ndc1	Nucleoporin NDC1 isoform X1. (666 aa)
	nup43	Nucleoporin Nup43. (345 aa)
	pom121c	Nuclear envelope pore membrane protein POM 121C. (1251 aa)
	sec13	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family. (320 aa)
	nup98	Nuclear pore complex protein Nup98-Nup96 isoform X1. (1806 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ctdnep1	LOC108271928	ENSIPUP00000007859	ENSIPUP00000029623	CTD nuclear envelope phosphatase 1.	Phosphatidate phosphatase LPIN2-like isoform X1.	0.813
Ctdnep1	LOC108275291	ENSIPUP00000007859	ENSIPUP00000019082	CTD nuclear envelope phosphatase 1.	Phosphatidate phosphatase LPIN1-like.	0.813
Ctdnep1	cnep1r1	ENSIPUP00000007859	ENSIPUP00000023406	CTD nuclear envelope phosphatase 1.	Nuclear envelope phosphatase-regulatory subunit 1.	0.832
Ctdnep1	lpin1	ENSIPUP00000007859	ENSIPUP00000020698	CTD nuclear envelope phosphatase 1.	Phosphatidate phosphatase LPIN1 isoform X1.	0.813
Ctdnep1	lpin2	ENSIPUP00000007859	ENSIPUP00000005557	CTD nuclear envelope phosphatase 1.	Phosphatidate phosphatase LPIN2 isoform X1.	0.813
ENSIPUP00000019732	ENSIPUP00000019829	ENSIPUP00000019732	ENSIPUP00000019829	annotation not available	annotation not available	0.503
ENSIPUP00000019732	LOC108256175	ENSIPUP00000019732	ENSIPUP00000008878	annotation not available	Inhibitor of nuclear factor kappa-B kinase subunit alpha-like isoform X2.	0.407
ENSIPUP00000019732	LOC108257839	ENSIPUP00000019732	ENSIPUP00000035712	annotation not available	Nucleoprotein TPR-like isoform X1.	0.966
ENSIPUP00000019732	LOC108261082	ENSIPUP00000019732	ENSIPUP00000029029	annotation not available	RANBP2-like and GRIP domain-containing protein 5/6.	0.503
ENSIPUP00000019732	LOC108264381	ENSIPUP00000019732	ENSIPUP00000029927	annotation not available	Nuclear receptor coactivator 5-like.	0.994
ENSIPUP00000019732	LOC108267136	ENSIPUP00000019732	ENSIPUP00000033997	annotation not available	G2/mitotic-specific cyclin-B3-like isoform X1; Belongs to the cyclin family.	0.518
ENSIPUP00000019732	LOC108278678	ENSIPUP00000019732	ENSIPUP00000018044	annotation not available	G2/mitotic-specific cyclin-B3-like; Belongs to the cyclin family.	0.518
ENSIPUP00000019732	aaas	ENSIPUP00000019732	ENSIPUP00000037066	annotation not available	Aladin isoform X2.	0.991
ENSIPUP00000019732	ccnb1	ENSIPUP00000019732	ENSIPUP00000024746	annotation not available	G2/mitotic-specific cyclin-B1 isoform X2; Belongs to the cyclin family.	0.546
ENSIPUP00000019732	ccnb2	ENSIPUP00000019732	ENSIPUP00000034584	annotation not available	G2/mitotic-specific cyclin-B2 isoform X1; Belongs to the cyclin family.	0.563
ENSIPUP00000019732	cdk1	ENSIPUP00000019732	ENSIPUP00000023146	annotation not available	Cyclin-dependent kinase 1 isoform X1; Belongs to the protein kinase superfamily.	0.588
ENSIPUP00000019732	ncoa5	ENSIPUP00000019732	ENSIPUP00000036939	annotation not available	Nuclear receptor coactivator 5 isoform X1.	0.994
ENSIPUP00000019732	ndc1	ENSIPUP00000019732	ENSIPUP00000014420	annotation not available	Nucleoporin NDC1 isoform X1.	0.982
ENSIPUP00000019732	nek7	ENSIPUP00000019732	ENSIPUP00000028505	annotation not available	Serine/threonine-protein kinase Nek7 isoform X2; Belongs to the protein kinase superfamily.	0.407
ENSIPUP00000019732	nek9	ENSIPUP00000019732	ENSIPUP00000010950	annotation not available	Serine/threonine-protein kinase Nek9.	0.842