21 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	pink1	Serine/threonine-protein kinase PINK1, mitochondrial. (564 aa)
	tomm22	Mitochondrial import receptor subunit TOM22 homolog. (133 aa)
	LOC108272680	Mitochondrial import receptor subunit TOM40 homolog. (339 aa)
	tomm5	Mitochondrial import receptor subunit tom5-like protein. (51 aa)
	TOMM7	Mitochondrial import receptor subunit TOM7 homolog. (131 aa)
	atg12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (125 aa)
	LOC108272662	Mitochondrial import receptor subunit TOM40 homolog. (335 aa)
	map1lc3b	Microtubule-associated proteins 1A/1B light chain 3B. (200 aa)
	tomm70	Mitochondrial import receptor subunit TOM70. (573 aa)
	prkn	Parkin RBR E3 ubiquitin protein ligase. (330 aa)
	sqstm1	Sequestosome-1. (460 aa)
	mterf3	Transcription termination factor 3, mitochondrial isoform X1. (410 aa)
	map1lc3a	Microtubule-associated proteins 1A/1B light chain 3A. (121 aa)
	rps27a	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
	tomm6	Mitochondrial import receptor subunit TOM6 homolog. (65 aa)
	gsap	Gamma-secretase-activating protein. (877 aa)
	mfn2	Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (757 aa)
	LOC108270971	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (751 aa)
	tomm20	Mitochondrial import receptor subunit tom20-like protein. (146 aa)
	TOMM40L	Mitochondrial import receptor subunit TOM40B-like. (318 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108270971	atg12	ENSIPUP00000031710	ENSIPUP00000012152	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.743
LOC108270971	atg5	ENSIPUP00000031710	ENSIPUP00000004982	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.780
LOC108270971	gsap	ENSIPUP00000031710	ENSIPUP00000026467	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Gamma-secretase-activating protein.	0.661
LOC108270971	map1lc3a	ENSIPUP00000031710	ENSIPUP00000020942	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Microtubule-associated proteins 1A/1B light chain 3A.	0.578
LOC108270971	map1lc3b	ENSIPUP00000031710	ENSIPUP00000013217	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Microtubule-associated proteins 1A/1B light chain 3B.	0.578
LOC108270971	mfn2	ENSIPUP00000031710	ENSIPUP00000030433	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.964
LOC108270971	mterf3	ENSIPUP00000031710	ENSIPUP00000020820	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Transcription termination factor 3, mitochondrial isoform X1.	0.629
LOC108270971	pink1	ENSIPUP00000031710	ENSIPUP00000000781	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Serine/threonine-protein kinase PINK1, mitochondrial.	0.907
LOC108270971	prkn	ENSIPUP00000031710	ENSIPUP00000016182	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Parkin RBR E3 ubiquitin protein ligase.	0.952
LOC108270971	rps27a	ENSIPUP00000031710	ENSIPUP00000022626	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]	0.559
LOC108270971	sqstm1	ENSIPUP00000031710	ENSIPUP00000019226	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Sequestosome-1.	0.701
LOC108270971	tomm20	ENSIPUP00000031710	ENSIPUP00000032642	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Mitochondrial import receptor subunit tom20-like protein.	0.680
LOC108270971	tomm70	ENSIPUP00000031710	ENSIPUP00000014960	Mitofusin-1-like isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Mitochondrial import receptor subunit TOM70.	0.490
LOC108272662	TOMM7	ENSIPUP00000012230	ENSIPUP00000006224	Mitochondrial import receptor subunit TOM40 homolog.	Mitochondrial import receptor subunit TOM7 homolog.	0.933
LOC108272662	pink1	ENSIPUP00000012230	ENSIPUP00000000781	Mitochondrial import receptor subunit TOM40 homolog.	Serine/threonine-protein kinase PINK1, mitochondrial.	0.701
LOC108272662	prkn	ENSIPUP00000012230	ENSIPUP00000016182	Mitochondrial import receptor subunit TOM40 homolog.	Parkin RBR E3 ubiquitin protein ligase.	0.418
LOC108272662	tomm20	ENSIPUP00000012230	ENSIPUP00000032642	Mitochondrial import receptor subunit TOM40 homolog.	Mitochondrial import receptor subunit tom20-like protein.	0.943
LOC108272662	tomm22	ENSIPUP00000012230	ENSIPUP00000002191	Mitochondrial import receptor subunit TOM40 homolog.	Mitochondrial import receptor subunit TOM22 homolog.	0.924
LOC108272662	tomm5	ENSIPUP00000012230	ENSIPUP00000004673	Mitochondrial import receptor subunit TOM40 homolog.	Mitochondrial import receptor subunit tom5-like protein.	0.877
LOC108272662	tomm6	ENSIPUP00000012230	ENSIPUP00000024327	Mitochondrial import receptor subunit TOM40 homolog.	Mitochondrial import receptor subunit TOM6 homolog.	0.874