STRINGSTRING
spata5 spata5 LOC108270125 LOC108270125 LOC108271110 LOC108271110 otud4 otud4 zranb1 zranb1 pten pten otub1 otub1 tnip2 tnip2 yod1 yod1 uba52 uba52 LOC108271158 LOC108271158 kxd1 kxd1 apc apc tnip1 tnip1 otud7b otud7b otub2 otub2 apc2 apc2 vcp vcp nod1 nod1 ripk2 ripk2 otud5 otud5 ripk1 ripk1 ikbkg ikbkg rnf128 rnf128 vcpip1 vcpip1 rps27a rps27a cdk1 cdk1 LOC108259815 LOC108259815 nod2 nod2 spata5l1 spata5l1 tnfaip3 tnfaip3 LOC108269686 LOC108269686 traf3 traf3 esr1 esr1 LOC108267915 LOC108267915 guf1 guf1 rnf167 rnf167 LOC108275340 LOC108275340 tp53 tp53 otub1-2 otub1-2 otud3 otud3 traf6 traf6 rnf13 rnf13
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
spata5Spermatogenesis-associated protein 5. (796 aa)
LOC108270125Ubiquitin thioesterase zranb1-B. (712 aa)
LOC108271110TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (550 aa)
otud4OTU domain-containing protein 4 isoform X1. (1278 aa)
zranb1Ubiquitin thioesterase ZRANB1. (637 aa)
ptenPhosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family. (402 aa)
otub1Ubiquitin thioesterase OTUB1. (266 aa)
tnip2TNFAIP3-interacting protein 2 isoform X1. (428 aa)
yod1Ubiquitin thioesterase OTU1. (297 aa)
uba52ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
LOC108271158Receptor-interacting serine/threonine-protein kinase 2-like isoform X1. (531 aa)
kxd1kxDL motif-containing protein 1 isoform X2. (187 aa)
apcAdenomatous polyposis coli protein isoform X1. (2760 aa)
tnip1TNFAIP3-interacting protein 1 isoform X7. (643 aa)
otud7bOTU domain-containing protein 7B isoform X1. (907 aa)
otub2Coiled-coil domain-containing protein 42 homolog isoform X1. (595 aa)
apc2Adenomatous polyposis coli protein 2. (2087 aa)
vcpTransitional Endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (806 aa)
nod1Nucleotide-binding oligomerization domain-containing protein 1. (946 aa)
ripk2Receptor-interacting serine/threonine-protein kinase 2; Serine/threonine/tyrosine kinase that plays an essential role in modulation of innate and adaptive immune responses. Upon stimulation by bacterial peptidoglycans, NOD1 and NOD2 are activated, oligomerize and recruit RIPK2 through CARD-CARD domains. (579 aa)
otud5OTU domain-containing protein 5 isoform X1. (573 aa)
ripk1Receptor-interacting serine/threonine-protein kinase 1 isoform X1. (656 aa)
ikbkgNF-kappa-B essential modulator. (568 aa)
rnf128E3 ubiquitin-protein ligase RNF128 isoform X1. (394 aa)
vcpip1Deubiquitinating protein VCIP135. (1114 aa)
rps27aUbiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
cdk1Cyclin-dependent kinase 1 isoform X1; Belongs to the protein kinase superfamily. (302 aa)
LOC108259815E3 ubiquitin-protein ligase RNF128-like. (395 aa)
nod2Nucleotide-binding oligomerization domain-containing protein 2. (981 aa)
spata5l1Spermatogenesis-associated protein 5-like protein 1. (764 aa)
tnfaip3Tumor necrosis factor alpha-induced protein 3. (764 aa)
LOC108269686annotation not available (442 aa)
traf3TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (556 aa)
esr1Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues; Belongs to the nuclear hormone receptor family. NR3 subfamily. (617 aa)
LOC108267915Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (394 aa)
guf1Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (676 aa)
rnf167E3 ubiquitin-protein ligase RNF167. (401 aa)
LOC108275340OTU domain-containing protein 7A-like isoform X1. (973 aa)
tp53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression (By similarity); Belongs to the p53 family. (376 aa)
otub1-2Ubiquitin thioesterase otub1. (269 aa)
otud3OTU domain-containing protein 3. (357 aa)
traf6TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (540 aa)
rnf13E3 ubiquitin-protein ligase RNF13. (384 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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