42 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108259797	Apoptosis-associated speck-like protein containing a CARD. (101 aa)
	LOC108273944	Histone acetyltransferase p300-like isoform X6. (2631 aa)
	ENSIPUP00000002007	annotation not available (133 aa)
	LOC108261415	Histone H2A; Belongs to the histone H2A family. (128 aa)
	stam	Signal transducing adapter molecule 1. (507 aa)
	stambpl1	AMSH-like protease isoform X1. (425 aa)
	stambp	STAM-binding protein. (442 aa)
	abraxas1	BRCA1-A complex subunit Abraxas. (393 aa)
	uba52	ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
	kxd1	kxDL motif-containing protein 1 isoform X2. (187 aa)
	LOC108277171	Histone H2A; Belongs to the histone H2A family. (128 aa)
	kat2b	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (767 aa)
	uimc1	BRCA1-A complex subunit RAP80 isoform X1. (960 aa)
	babam1	BRISC and BRCA1-A complex member 1. (369 aa)
	LOC108260105	Histone H2A; Belongs to the histone H2A family. (142 aa)
	ENSIPUP00000013090	annotation not available (146 aa)
	ENSIPUP00000013437	annotation not available (145 aa)
	ENSIPUP00000013606	annotation not available (104 aa)
	LOC108261415-2	Histone H2A. (128 aa)
	ENSIPUP00000014571	annotation not available (96 aa)
	psmd14	26S proteasome non-ATPase regulatory subunit 14. (300 aa)
	babam2	BRCA1-A complex subunit BRE. (386 aa)
	brcc3	Lys-63-specific deubiquitinase BRCC36 isoform X1. (260 aa)
	ENSIPUP00000016196	annotation not available (490 aa)
	LOC108258592	Histone H2A; Belongs to the histone H2A family. (132 aa)
	ENSIPUP00000017440	annotation not available (144 aa)
	ENSIPUP00000017506	annotation not available (134 aa)
	LOC108261415-3	Histone H2A. (128 aa)
	ENSIPUP00000018859	annotation not available (126 aa)
	LOC108261415-4	Histone H2A. (128 aa)
	LOC108261415-5	Histone H2A. (128 aa)
	ENSIPUP00000019080	annotation not available (285 aa)
	ENSIPUP00000019179	annotation not available (132 aa)
	mysm1	Histone H2A deubiquitinase MYSM1. (829 aa)
	rps27a	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
	mpnd	MPN domain-containing protein. (458 aa)
	ankrd12	Ankyrin repeat domain-containing protein 12 isoform X2. (2035 aa)
	LOC108255359	Uncharacterized protein LOC108255359 isoform X2. (1394 aa)
	abraxas2	BRISC complex subunit Abro1 isoform X1. (416 aa)
	brca1	Breast cancer type 1 susceptibility protein isoform X2. (1369 aa)
	LOC108272975	Histone acetyltransferase p300-like isoform X2. (2494 aa)
	ankrd11	Ankyrin repeat domain-containing protein 11 isoform X2. (2820 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000002007	brca1	ENSIPUP00000002007	ENSIPUP00000032657	annotation not available	Breast cancer type 1 susceptibility protein isoform X2.	0.565
ENSIPUP00000002007	kat2b	ENSIPUP00000002007	ENSIPUP00000009562	annotation not available	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.409
ENSIPUP00000002007	mysm1	ENSIPUP00000002007	ENSIPUP00000019399	annotation not available	Histone H2A deubiquitinase MYSM1.	0.973
ENSIPUP00000002007	rps27a	ENSIPUP00000002007	ENSIPUP00000022626	annotation not available	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]	0.685
ENSIPUP00000002007	uba52	ENSIPUP00000002007	ENSIPUP00000007381	annotation not available	ubiquitin-60S ribosomal protein L40 isoform X1.	0.677
ENSIPUP00000013090	brca1	ENSIPUP00000013090	ENSIPUP00000032657	annotation not available	Breast cancer type 1 susceptibility protein isoform X2.	0.565
ENSIPUP00000013090	kat2b	ENSIPUP00000013090	ENSIPUP00000009562	annotation not available	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.409
ENSIPUP00000013090	mysm1	ENSIPUP00000013090	ENSIPUP00000019399	annotation not available	Histone H2A deubiquitinase MYSM1.	0.973
ENSIPUP00000013090	rps27a	ENSIPUP00000013090	ENSIPUP00000022626	annotation not available	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]	0.685
ENSIPUP00000013090	uba52	ENSIPUP00000013090	ENSIPUP00000007381	annotation not available	ubiquitin-60S ribosomal protein L40 isoform X1.	0.677
ENSIPUP00000013437	brca1	ENSIPUP00000013437	ENSIPUP00000032657	annotation not available	Breast cancer type 1 susceptibility protein isoform X2.	0.565
ENSIPUP00000013437	kat2b	ENSIPUP00000013437	ENSIPUP00000009562	annotation not available	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.409
ENSIPUP00000013437	mysm1	ENSIPUP00000013437	ENSIPUP00000019399	annotation not available	Histone H2A deubiquitinase MYSM1.	0.973
ENSIPUP00000013437	rps27a	ENSIPUP00000013437	ENSIPUP00000022626	annotation not available	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]	0.685
ENSIPUP00000013437	uba52	ENSIPUP00000013437	ENSIPUP00000007381	annotation not available	ubiquitin-60S ribosomal protein L40 isoform X1.	0.677
ENSIPUP00000013606	brca1	ENSIPUP00000013606	ENSIPUP00000032657	annotation not available	Breast cancer type 1 susceptibility protein isoform X2.	0.560
ENSIPUP00000013606	kat2b	ENSIPUP00000013606	ENSIPUP00000009562	annotation not available	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.401
ENSIPUP00000013606	mysm1	ENSIPUP00000013606	ENSIPUP00000019399	annotation not available	Histone H2A deubiquitinase MYSM1.	0.973
ENSIPUP00000013606	rps27a	ENSIPUP00000013606	ENSIPUP00000022626	annotation not available	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]	0.685
ENSIPUP00000013606	uba52	ENSIPUP00000013606	ENSIPUP00000007381	annotation not available	ubiquitin-60S ribosomal protein L40 isoform X1.	0.663