STRINGSTRING
LOC108260489 LOC108260489 ube2i ube2i mre11 mre11 LOC108262486 LOC108262486 LOC108262497 LOC108262497 pias4 pias4 LOC108262536 LOC108262536 LOC108261379 LOC108261379 LOC108262589 LOC108262589 LOC108255684 LOC108255684 LOC108262596 LOC108262596 ENSIPUP00000002007 ENSIPUP00000002007 LOC108262617 LOC108262617 LOC108262621 LOC108262621 ENSIPUP00000002141 ENSIPUP00000002141 LOC108262673 LOC108262673 ENSIPUP00000002932 ENSIPUP00000002932 apbb1 apbb1 nbn nbn ENSIPUP00000005160 ENSIPUP00000005160 LOC108272432 LOC108272432 LOC108272324 LOC108272324 abraxas1 abraxas1 LOC108261983 LOC108261983 uba52 uba52 mdc1 mdc1 smarca5 smarca5 kxd1 kxd1 ENSIPUP00000009144 ENSIPUP00000009144 LOC108277171 LOC108277171 ppp5c ppp5c uimc1 uimc1 nsd2 nsd2 babam1 babam1 ENSIPUP00000011444 ENSIPUP00000011444 ENSIPUP00000011897 ENSIPUP00000011897 LOC108261425 LOC108261425 atm atm LOC108261488 LOC108261488 eya1 eya1 baz1b baz1b ENSIPUP00000012797 ENSIPUP00000012797 LOC108261379-2 LOC108261379-2 ENSIPUP00000013437 ENSIPUP00000013437 LOC108261690 LOC108261690 ENSIPUP00000013757 ENSIPUP00000013757 babam2 babam2 eya4 eya4 ube2v2 ube2v2 brcc3 brcc3 LOC108261712 LOC108261712 ENSIPUP00000016196 ENSIPUP00000016196 ENSIPUP00000016437 ENSIPUP00000016437 LOC108258592 LOC108258592 ENSIPUP00000017001 ENSIPUP00000017001 LOC108261860 LOC108261860 LOC108261861 LOC108261861 ENSIPUP00000017440 ENSIPUP00000017440 LOC108261901 LOC108261901 LOC108261899 LOC108261899 ENSIPUP00000017662 ENSIPUP00000017662 LOC108255684-2 LOC108255684-2 LOC108261964 LOC108261964 LOC108261379-3 LOC108261379-3 ENSIPUP00000018324 ENSIPUP00000018324 rad50 rad50 LOC108255684-3 LOC108255684-3 LOC108262131 LOC108262131 ENSIPUP00000018991 ENSIPUP00000018991 ENSIPUP00000019080 ENSIPUP00000019080 LOC108255684-4 LOC108255684-4 LOC108255684-5 LOC108255684-5 LOC108262397 LOC108262397 LOC108262407 LOC108262407 LOC108280529 LOC108280529 kat5 kat5 rps27a rps27a abl1 abl1 chek2 chek2 LOC108260009 LOC108260009 ube2n ube2n ankrd12 ankrd12 eya3 eya3 LOC108255359 LOC108255359 LOC108257257 LOC108257257 LOC108267915 LOC108267915 LOC108261097 LOC108261097 rnf169 rnf169 rnf168 rnf168 sumo1 sumo1 tp53 tp53 rnf8 rnf8 brca1 brca1 ENSIPUP00000033019 ENSIPUP00000033019 herc2 herc2 tp53bp1 tp53bp1 ankrd11 ankrd11 pwwp2a pwwp2a eya2 eya2 LOC108271011 LOC108271011
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108260489Histone H2B; Belongs to the histone H2B family. (117 aa)
ube2iSUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (177 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (698 aa)
LOC108262486Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (96 aa)
LOC108262497Histone H4-like. (96 aa)
pias4E3 SUMO-protein ligase PIAS4. (506 aa)
LOC108262536Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (100 aa)
LOC108261379Histone H2B 1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (124 aa)
LOC108262589Histone H4-like. (96 aa)
LOC108255684Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC108262596Histone H4-like. (96 aa)
ENSIPUP00000002007annotation not available (133 aa)
LOC108262617Histone H2B-like. (103 aa)
LOC108262621Histone H4-like. (75 aa)
ENSIPUP00000002141annotation not available (67 aa)
LOC108262673Histone H2B; Belongs to the histone H2B family. (124 aa)
ENSIPUP00000002932annotation not available (108 aa)
apbb1Amyloid beta A4 precursor protein-binding family B member 1. (747 aa)
nbnNibrin. (831 aa)
ENSIPUP00000005160annotation not available (81 aa)
LOC108272432Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (102 aa)
LOC108272324Histone H2B; Belongs to the histone H2B family. (124 aa)
abraxas1BRCA1-A complex subunit Abraxas. (393 aa)
LOC108261983Histone H2B-like; Belongs to the histone H2B family. (88 aa)
uba52ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
mdc1Mediator of DNA damage checkpoint protein 1 isoform X2. (1909 aa)
smarca5SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (1090 aa)
kxd1kxDL motif-containing protein 1 isoform X2. (187 aa)
ENSIPUP00000009144Histone H2B 3. (118 aa)
LOC108277171Histone H2A; Belongs to the histone H2A family. (128 aa)
ppp5cSerine/threonine-protein phosphatase. (481 aa)
uimc1BRCA1-A complex subunit RAP80 isoform X1. (960 aa)
nsd2Histone-lysine N-methyltransferase NSD2 isoform X2. (1480 aa)
babam1BRISC and BRCA1-A complex member 1. (369 aa)
ENSIPUP00000011444annotation not available (131 aa)
ENSIPUP00000011897annotation not available (218 aa)
LOC108261425Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (104 aa)
atmNon-specific serine/threonine protein kinase. (3076 aa)
LOC108261488Histone H2B; Belongs to the histone H2B family. (124 aa)
eya1Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (604 aa)
baz1bTyrosine-protein kinase BAZ1B isoform X1. (1573 aa)
ENSIPUP00000012797annotation not available (109 aa)
LOC108261379-2Histone H2B-like. (124 aa)
ENSIPUP00000013437annotation not available (145 aa)
LOC108261690Histone H4. (96 aa)
ENSIPUP00000013757annotation not available (100 aa)
babam2BRCA1-A complex subunit BRE. (386 aa)
eya4Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (644 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (148 aa)
brcc3Lys-63-specific deubiquitinase BRCC36 isoform X1. (260 aa)
LOC108261712Histone H4-like. (81 aa)
ENSIPUP00000016196annotation not available (490 aa)
ENSIPUP00000016437annotation not available (175 aa)
LOC108258592Histone H2A; Belongs to the histone H2A family. (132 aa)
ENSIPUP00000017001annotation not available (67 aa)
LOC108261860Histone H4-like. (96 aa)
LOC108261861Histone H2B; Belongs to the histone H2B family. (125 aa)
ENSIPUP00000017440annotation not available (144 aa)
LOC108261901Histone H4-like. (96 aa)
LOC108261899Histone H2B-like. (117 aa)
ENSIPUP00000017662annotation not available (150 aa)
LOC108255684-2Histone H4. (103 aa)
LOC108261964Histone H2B; Belongs to the histone H2B family. (124 aa)
LOC108261379-3Histone H2B-like. (124 aa)
ENSIPUP00000018324annotation not available (150 aa)
rad50DNA repair protein RAD50 isoform X1. (1311 aa)
LOC108255684-3Histone H4. (103 aa)
LOC108262131Histone H2B-like. (90 aa)
ENSIPUP00000018991annotation not available (96 aa)
ENSIPUP00000019080annotation not available (285 aa)
LOC108255684-4Histone H4. (103 aa)
LOC108255684-5Histone H4. (103 aa)
LOC108262397Histone H4-like. (96 aa)
LOC108262407Histone H2B; Belongs to the histone H2B family. (164 aa)
LOC108280529Lysine-specific demethylase 4A-like isoform X1. (916 aa)
kat5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (435 aa)
rps27aUbiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
abl1Tyrosine-protein kinase. (1089 aa)
chek2Serine/threonine-protein kinase Chk2. (539 aa)
LOC108260009Putative global transcription activator SNF2L1. (1016 aa)
ube2nUbiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
ankrd12Ankyrin repeat domain-containing protein 12 isoform X2. (2035 aa)
eya3Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (659 aa)
LOC108255359Uncharacterized protein LOC108255359 isoform X2. (1394 aa)
LOC108257257SUMO-conjugating enzyme UBC9-B. (157 aa)
LOC108267915Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (394 aa)
LOC108261097Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
rnf169E3 ubiquitin-protein ligase RNF169. (619 aa)
rnf168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recrui [...] (461 aa)
sumo1Small ubiquitin-related modifier. (131 aa)
tp53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression (By similarity); Belongs to the p53 family. (376 aa)
rnf8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (491 aa)
brca1Breast cancer type 1 susceptibility protein isoform X2. (1369 aa)
ENSIPUP00000033019annotation not available (92 aa)
herc2E3 ubiquitin-protein ligase HERC2. (4717 aa)
tp53bp1Tumor suppressor p53-binding protein 1 isoform X3. (1750 aa)
ankrd11Ankyrin repeat domain-containing protein 11 isoform X2. (2820 aa)
pwwp2aPWWP domain-containing protein 2A. (668 aa)
eya2Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (476 aa)
LOC108271011Lysine-specific demethylase 4B-like isoform X1. (1105 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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