STRINGSTRING
pole pole nbn nbn ENSIPUP00000005160 ENSIPUP00000005160 LOC108272432 LOC108272432 LOC108272324 LOC108272324 rfc1 rfc1 abraxas1 abraxas1 eme1 eme1 LOC108261983 LOC108261983 cdca7l cdca7l rad52 rad52 rpa1 rpa1 recql4 recql4 topbp1 topbp1 LOC108271937 LOC108271937 rad51ap1 rad51ap1 uba52 uba52 mdc1 mdc1 kxd1 kxd1 ENSIPUP00000009144 ENSIPUP00000009144 LOC108277171 LOC108277171 rad1 rad1 uimc1 uimc1 LOC108276138 LOC108276138 nsd2 nsd2 babam1 babam1 pole4 pole4 pole3 pole3 ENSIPUP00000011444 ENSIPUP00000011444 ENSIPUP00000011577 ENSIPUP00000011577 ENSIPUP00000011897 ENSIPUP00000011897 LOC108261425 LOC108261425 atm atm LOC108261488 LOC108261488 ENSIPUP00000012797 ENSIPUP00000012797 rmi1 rmi1 LOC108261379-2 LOC108261379-2 ENSIPUP00000013437 ENSIPUP00000013437 LOC108261690 LOC108261690 ENSIPUP00000013757 ENSIPUP00000013757 ccna1 ccna1 babam2 babam2 rfc3 rfc3 brcc3 brcc3 LOC108261712 LOC108261712 ENSIPUP00000016196 ENSIPUP00000016196 ENSIPUP00000016437 ENSIPUP00000016437 atrip atrip LOC108258592 LOC108258592 slx4 slx4 LOC108272412 LOC108272412 ENSIPUP00000017001 ENSIPUP00000017001 LOC108261860 LOC108261860 LOC108261861 LOC108261861 ENSIPUP00000017440 ENSIPUP00000017440 LOC108261901 LOC108261901 LOC108261899 LOC108261899 ENSIPUP00000017662 ENSIPUP00000017662 rfc4 rfc4 LOC108255684-2 LOC108255684-2 LOC108261964 LOC108261964 LOC108261379-3 LOC108261379-3 sirt7 sirt7 tdrd3 tdrd3 ENSIPUP00000018324 ENSIPUP00000018324 cdk2 cdk2 timeless timeless rad50 rad50 LOC108255684-3 LOC108255684-3 LOC108262131 LOC108262131 ENSIPUP00000018991 ENSIPUP00000018991 ENSIPUP00000019080 ENSIPUP00000019080 polk polk brca2 brca2 LOC108255684-4 LOC108255684-4 LOC108255684-5 LOC108255684-5 LOC108262397 LOC108262397 LOC108262407 LOC108262407 pold4 pold4 kat5 kat5 rpa2 rpa2 rps27a rps27a abl1 abl1 atr atr rad51 rad51 rad9a rad9a ccna2 ccna2 pole2 pole2 ppp4c ppp4c polh polh top3a top3a gen1 gen1 ube2n ube2n rpa3 rpa3 ankrd12 ankrd12 rhno1 rhno1 sirt6 sirt6 dna2 dna2 slf1 slf1 exo1 exo1 LOC108255359 LOC108255359 hus1 hus1 LOC108273059 LOC108273059 rad51c rad51c rmi2 rmi2 LOC108267068 LOC108267068 LOC108257257 LOC108257257 tipin tipin rfc5 rfc5 cdca7 cdca7 mus81 mus81 LOC108261097 LOC108261097 rnf169 rnf169 rcbtb1 rcbtb1 rnf168 rnf168 rcbtb2 rcbtb2 rnf8 rnf8 sumo2 sumo2 brca1 brca1 ENSIPUP00000033019 ENSIPUP00000033019 herc2 herc2 rad17 rad17 sumo2-2 sumo2-2 tp53bp1 tp53bp1 pold1 pold1 ankrd11 ankrd11 rad51d rad51d pwwp2a pwwp2a pcna pcna rfc2 rfc2 rad9b rad9b spidr spidr ube2v2 ube2v2 LOC108260489 LOC108260489 ube2i ube2i blm blm exd2 exd2 mre11 mre11 LOC108262486 LOC108262486 LOC108262497 LOC108262497 ppp4r2 ppp4r2 pias4 pias4 palb2 palb2 LOC108262536 LOC108262536 rbbp8 rbbp8 LOC108261379 LOC108261379 LOC108262589 LOC108262589 LOC108255684 LOC108255684 LOC108262596 LOC108262596 ENSIPUP00000002007 ENSIPUP00000002007 LOC108262617 LOC108262617 LOC108262621 LOC108262621 ENSIPUP00000002141 ENSIPUP00000002141 LOC108262673 LOC108262673 chek1 chek1 wrn wrn ENSIPUP00000002932 ENSIPUP00000002932 meiob meiob pold3 pold3 pold2 pold2 xrcc2 xrcc2 ENSIPUP00000003801 ENSIPUP00000003801
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2286 aa)
nbnNibrin. (831 aa)
ENSIPUP00000005160annotation not available (81 aa)
LOC108272432Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (102 aa)
LOC108272324Histone H2B; Belongs to the histone H2B family. (124 aa)
rfc1Replication factor C subunit 1. (1129 aa)
abraxas1BRCA1-A complex subunit Abraxas. (393 aa)
eme1Crossover junction endonuclease EME1. (516 aa)
LOC108261983Histone H2B-like; Belongs to the histone H2B family. (88 aa)
cdca7lCell division cycle-associated 7-like protein. (473 aa)
rad52DNA repair protein RAD52 homolog isoform X1. (456 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (606 aa)
recql4ATP-dependent DNA helicase Q4. (1490 aa)
topbp1DNA topoisomerase 2-binding protein 1 isoform X7. (1561 aa)
LOC108271937Crossover junction endonuclease EME1-like. (431 aa)
rad51ap1RAD51-associated protein 1. (349 aa)
uba52ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
mdc1Mediator of DNA damage checkpoint protein 1 isoform X2. (1909 aa)
kxd1kxDL motif-containing protein 1 isoform X2. (187 aa)
ENSIPUP00000009144Histone H2B 3. (118 aa)
LOC108277171Histone H2A; Belongs to the histone H2A family. (128 aa)
rad1Cell cycle checkpoint protein RAD1 isoform X1. (291 aa)
uimc1BRCA1-A complex subunit RAP80 isoform X1. (960 aa)
LOC108276138Serine/threonine-protein phosphatase 4 regulatory subunit 2-A-like isoform X1. (418 aa)
nsd2Histone-lysine N-methyltransferase NSD2 isoform X2. (1480 aa)
babam1BRISC and BRCA1-A complex member 1. (369 aa)
pole4DNA polymerase epsilon subunit 4. (125 aa)
pole3DNA polymerase epsilon subunit 3. (149 aa)
ENSIPUP00000011444annotation not available (131 aa)
ENSIPUP00000011577DNA replication ATP-dependent helicase/nuclease DNA2-like. (96 aa)
ENSIPUP00000011897annotation not available (218 aa)
LOC108261425Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (104 aa)
atmNon-specific serine/threonine protein kinase. (3076 aa)
LOC108261488Histone H2B; Belongs to the histone H2B family. (124 aa)
ENSIPUP00000012797annotation not available (109 aa)
rmi1recQ-mediated genome instability protein 1. (649 aa)
LOC108261379-2Histone H2B-like. (124 aa)
ENSIPUP00000013437annotation not available (145 aa)
LOC108261690Histone H4. (96 aa)
ENSIPUP00000013757annotation not available (100 aa)
ccna1cyclin-A1 isoform X2; Belongs to the cyclin family. (397 aa)
babam2BRCA1-A complex subunit BRE. (386 aa)
rfc3Replication factor C subunit 3. (356 aa)
brcc3Lys-63-specific deubiquitinase BRCC36 isoform X1. (260 aa)
LOC108261712Histone H4-like. (81 aa)
ENSIPUP00000016196annotation not available (490 aa)
ENSIPUP00000016437annotation not available (175 aa)
atripATR-interacting protein. (754 aa)
LOC108258592Histone H2A; Belongs to the histone H2A family. (132 aa)
slx4Structure-specific endonuclease subunit SLX4. (1195 aa)
LOC108272412Replication protein A 32 kDa subunit-like. (251 aa)
ENSIPUP00000017001annotation not available (67 aa)
LOC108261860Histone H4-like. (96 aa)
LOC108261861Histone H2B; Belongs to the histone H2B family. (125 aa)
ENSIPUP00000017440annotation not available (144 aa)
LOC108261901Histone H4-like. (96 aa)
LOC108261899Histone H2B-like. (117 aa)
ENSIPUP00000017662annotation not available (150 aa)
rfc4Replication factor C subunit 4 isoform X1. (358 aa)
LOC108255684-2Histone H4. (103 aa)
LOC108261964Histone H2B; Belongs to the histone H2B family. (124 aa)
LOC108261379-3Histone H2B-like. (124 aa)
sirt7NAD-dependent protein deacetylase sirtuin-7. (411 aa)
tdrd3Tudor domain-containing protein 3. (801 aa)
ENSIPUP00000018324annotation not available (150 aa)
cdk2Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (301 aa)
timelessProtein timeless homolog. (1245 aa)
rad50DNA repair protein RAD50 isoform X1. (1311 aa)
LOC108255684-3Histone H4. (103 aa)
LOC108262131Histone H2B-like. (90 aa)
ENSIPUP00000018991annotation not available (96 aa)
ENSIPUP00000019080annotation not available (285 aa)
polkDNA polymerase kappa. (927 aa)
brca2Breast cancer type 2 susceptibility protein isoform X1. (2673 aa)
LOC108255684-4Histone H4. (103 aa)
LOC108255684-5Histone H4. (103 aa)
LOC108262397Histone H4-like. (96 aa)
LOC108262407Histone H2B; Belongs to the histone H2B family. (164 aa)
pold4DNA polymerase delta subunit 4. (109 aa)
kat5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (435 aa)
rpa2Replication protein A 32 kDa subunit. (294 aa)
rps27aUbiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
abl1Tyrosine-protein kinase. (1089 aa)
atrSerine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family. (2616 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (372 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (384 aa)
ccna2cyclin-A2; Belongs to the cyclin family. (423 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
ppp4cSerine/threonine-protein phosphatase. (307 aa)
polhDNA polymerase eta. (299 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (999 aa)
gen1Flap endonuclease GEN homolog 1 isoform X2. (893 aa)
ube2nUbiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
rpa3Replication protein A 14 kDa subunit. (122 aa)
ankrd12Ankyrin repeat domain-containing protein 12 isoform X2. (2035 aa)
rhno1RAD9, HUS1, RAD1-interacting nuclear orphan protein 1. (293 aa)
sirt6NAD-dependent protein deacetylase sirtuin-6 isoform X1. (386 aa)
dna2DNA replication ATP-dependent helicase/nuclease DNA2 isoform X4. (1343 aa)
slf1SMC5-SMC6 complex localization factor protein 1 isoform X1. (891 aa)
exo1Exonuclease 1 isoform X1. (769 aa)
LOC108255359Uncharacterized protein LOC108255359 isoform X2. (1394 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (281 aa)
LOC108273059Small ubiquitin-related modifier. (94 aa)
rad51cDNA repair protein RAD51 homolog 3 isoform X1. (361 aa)
rmi2RecQ-mediated Genome instability protein 2. (146 aa)
LOC108267068Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (263 aa)
LOC108257257SUMO-conjugating enzyme UBC9-B. (157 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (297 aa)
rfc5Replication factor C subunit 5. (339 aa)
cdca7Cell division cycle-associated protein 7. (400 aa)
mus81Crossover junction endonuclease MUS81. (627 aa)
LOC108261097Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
rnf169E3 ubiquitin-protein ligase RNF169. (619 aa)
rcbtb1RCC1 and BTB domain-containing protein 1. (531 aa)
rnf168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recrui [...] (461 aa)
rcbtb2RCC1 and BTB domain-containing protein 2. (540 aa)
rnf8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (491 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
brca1Breast cancer type 1 susceptibility protein isoform X2. (1369 aa)
ENSIPUP00000033019annotation not available (92 aa)
herc2E3 ubiquitin-protein ligase HERC2. (4717 aa)
rad17Cell cycle checkpoint protein RAD17 isoform X4. (701 aa)
sumo2-2Small ubiquitin-related modifier. (95 aa)
tp53bp1Tumor suppressor p53-binding protein 1 isoform X3. (1750 aa)
pold1DNA polymerase. (1066 aa)
ankrd11Ankyrin repeat domain-containing protein 11 isoform X2. (2820 aa)
rad51dDNA repair protein RAD51 homolog 4. (331 aa)
pwwp2aPWWP domain-containing protein 2A. (668 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (297 aa)
rfc2Replication factor C subunit 2. (357 aa)
rad9bCell cycle checkpoint control protein RAD9B isoform X1. (412 aa)
spidrDNA repair-scaffolding protein isoform X2. (862 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (148 aa)
LOC108260489Histone H2B; Belongs to the histone H2B family. (117 aa)
ube2iSUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (177 aa)
blmBloom syndrome protein isoform X1. (1132 aa)
exd2Exonuclease 3'-5' domain-containing protein 2 isoform X1. (631 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (698 aa)
LOC108262486Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (96 aa)
LOC108262497Histone H4-like. (96 aa)
ppp4r2Serine/threonine-protein phosphatase 4 regulatory subunit 2. (408 aa)
pias4E3 SUMO-protein ligase PIAS4. (506 aa)
palb2Partner and localizer of BRCA2 isoform X2. (1316 aa)
LOC108262536Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (100 aa)
rbbp8DNA endonuclease RBBP8. (74 aa)
LOC108261379Histone H2B 1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (124 aa)
LOC108262589Histone H4-like. (96 aa)
LOC108255684Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC108262596Histone H4-like. (96 aa)
ENSIPUP00000002007annotation not available (133 aa)
LOC108262617Histone H2B-like. (103 aa)
LOC108262621Histone H4-like. (75 aa)
ENSIPUP00000002141annotation not available (67 aa)
LOC108262673Histone H2B; Belongs to the histone H2B family. (124 aa)
chek1Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily. (466 aa)
wrnWerner syndrome ATP-dependent helicase isoform X1. (1429 aa)
ENSIPUP00000002932annotation not available (108 aa)
meiobMeiosis-specific with OB domain-containing protein. (466 aa)
pold3DNA polymerase delta subunit 3 isoform X1. (471 aa)
pold2DNA polymerase delta subunit 2. (467 aa)
xrcc2DNA repair protein XRCC2. (307 aa)
ENSIPUP00000003801annotation not available (96 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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