STRINGSTRING
ino80b ino80b cetn1 cetn1 xpc xpc ENSIPUP00000008363 ENSIPUP00000008363 ddb1 ddb1 kxd1 kxd1 rpap3 rpap3 tfpt tfpt cops6 cops6 LOC108275467 LOC108275467 LOC108258691 LOC108258691 ino80e ino80e rad23b rad23b cops7a cops7a ENSIPUP00000006818 ENSIPUP00000006818 uba52 uba52 LOC108271249 LOC108271249 actr5 actr5 nfrkb nfrkb actr8 actr8 rbx1 rbx1 LOC108279000 LOC108279000 LOC100304682 LOC100304682 cops2 cops2 ENSIPUP00000030308 ENSIPUP00000030308 cops8 cops8 parp1 parp1 LOC108258103 LOC108258103 cops4 cops4 ino80c ino80c cetn3 cetn3 LOC108266575 LOC108266575 cul4b cul4b ino80 ino80 parp3 parp3 actb actb ruvbl1 ruvbl1 parp2 parp2 rps27a rps27a gps1 gps1 cops5 cops5 LOC108272719 LOC108272719 mcrs1 mcrs1 cops3 cops3 cul4a cul4a LOC108280745 LOC108280745
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ino80bINO80 complex subunit B isoform X2. (347 aa)
cetn1Centrin-1. (186 aa)
xpcDNA repair protein complementing XP-C cells isoform X1. (896 aa)
ENSIPUP00000008363annotation not available (120 aa)
ddb1DNA damage-binding protein 1. (1140 aa)
kxd1kxDL motif-containing protein 1 isoform X2. (187 aa)
rpap3RNA polymerase II-associated protein 3. (668 aa)
tfptTCF3 fusion partner. (221 aa)
cops6COP9 signalosome complex subunit 6. (324 aa)
LOC108275467Nuclear pore complex protein DDB_G0274915-like. (510 aa)
LOC108258691Actin, cytoplasmic 1. (375 aa)
ino80eINO80 complex subunit E. (233 aa)
rad23bUV excision repair protein RAD23 homolog B. (384 aa)
cops7aCOP9 signalosome complex subunit 7a. (268 aa)
ENSIPUP00000006818annotation not available (217 aa)
uba52ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
LOC108271249UV excision repair protein RAD23 homolog A-like isoform X1. (468 aa)
actr5Actin-related protein 5; Belongs to the actin family. (619 aa)
nfrkbNuclear factor related to kappa-B-binding protein isoform X1. (1285 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (671 aa)
rbx1E3 ubiquitin-protein ligase RBX1. (108 aa)
LOC108279000E3 ubiquitin-protein ligase RBX1-like. (108 aa)
LOC100304682Transcriptional repressor protein YY1. (366 aa)
cops2COP9 signalosome complex subunit 2 isoform X2. (464 aa)
ENSIPUP00000030308annotation not available (162 aa)
cops8COP9 signalosome complex subunit 8. (199 aa)
parp1Poly [ADP-ribose] polymerase. (1018 aa)
LOC108258103Transcriptional repressor protein YY1-like isoform X1. (389 aa)
cops4COP9 signalosome complex subunit 4 isoform X2. (406 aa)
ino80cINO80 complex subunit C. (208 aa)
cetn3Centrin-3 isoform X2. (208 aa)
LOC108266575INO80 complex subunit D-like. (941 aa)
cul4bcullin-4B; Belongs to the cullin family. (854 aa)
ino80DNA helicase INO80. (1495 aa)
parp3Poly [ADP-ribose] polymerase. (524 aa)
actbActin, cytoplasmic 1. (377 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
parp2Poly [ADP-ribose] polymerase. (629 aa)
rps27aUbiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
gps1COP9 signalosome complex subunit 1. (487 aa)
cops5COP9 signalosome complex subunit 5. (334 aa)
LOC108272719INO80 complex subunit D-B-like. (843 aa)
mcrs1Microspherule protein 1 isoform X2. (488 aa)
cops3COP9 signalosome complex subunit 3. (423 aa)
cul4acullin-4A; Belongs to the cullin family. (741 aa)
LOC108280745Von Willebrand factor A domain-containing protein 5B1-like isoform X2. (1300 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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