STRINGSTRING
LOC108271213 LOC108271213 pole4 pole4 actb actb LOC108273059 LOC108273059 parp3 parp3 ino80 ino80 cul4b cul4b LOC108266575 LOC108266575 cetn3 cetn3 ino80c ino80c LOC108257257 LOC108257257 LOC108259600 LOC108259600 cdk7 cdk7 gtf2h5 gtf2h5 rfc5 rfc5 cops4 cops4 LOC108258103 LOC108258103 pole pole parp1 parp1 gtf2h3 gtf2h3 ercc2 ercc2 xpc xpc ENSIPUP00000008363 ENSIPUP00000008363 ddb1 ddb1 kxd1 kxd1 ube2v2 ube2v2 tfpt tfpt ube2i ube2i cops6 cops6 LOC108275467 LOC108275467 usp45 usp45 LOC108258691 LOC108258691 ercc4 ercc4 nfatc2ip nfatc2ip meiob meiob pold3 pold3 pold2 pold2 ENSIPUP00000003801 ENSIPUP00000003801 mnat1 mnat1 rad23b rad23b rfc1 rfc1 rpa1 rpa1 cops7a cops7a ENSIPUP00000006818 ENSIPUP00000006818 uba52 uba52 ino80e ino80e rpap3 rpap3 LOC108271249 LOC108271249 actr5 actr5 rfc2 rfc2 nfrkb nfrkb pcna pcna actr8 actr8 rnf111 rnf111 pold1 pold1 LOC108264782 LOC108264782 sumo2-2 sumo2-2 gtf2h2c gtf2h2c rbx1 rbx1 LOC108273255 LOC108273255 chd1l chd1l sumo2 sumo2 LOC108279000 LOC108279000 rcbtb2 rcbtb2 LOC100304682 LOC100304682 ercc3 ercc3 sumo1 sumo1 cops2 cops2 ENSIPUP00000030308 ENSIPUP00000030308 cops8 cops8 rcbtb1 rcbtb1 rpa3 rpa3 ruvbl1 ruvbl1 ercc1 ercc1 kctd2 kctd2 mcrs1 mcrs1 polk polk LOC108272719 LOC108272719 ccnh ccnh pold4 pold4 rfc4 rfc4 cops5 cops5 gps1 gps1 rpa2 rpa2 rps27a rps27a parp2 parp2 gtf2h4 gtf2h4 atad5 atad5 pole2 pole2 ube2n ube2n cops3 cops3 LOC108272412 LOC108272412 cul4a cul4a gtf2h1 gtf2h1 rfc3 rfc3 ercc5 ercc5 bivm bivm LOC108280745 LOC108280745 ino80b ino80b cetn1 cetn1 pole3 pole3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108271213C-C motif chemokine 20-like. (127 aa)
pole4DNA polymerase epsilon subunit 4. (125 aa)
actbActin, cytoplasmic 1. (377 aa)
LOC108273059Small ubiquitin-related modifier. (94 aa)
parp3Poly [ADP-ribose] polymerase. (524 aa)
ino80DNA helicase INO80. (1495 aa)
cul4bcullin-4B; Belongs to the cullin family. (854 aa)
LOC108266575INO80 complex subunit D-like. (941 aa)
cetn3Centrin-3 isoform X2. (208 aa)
ino80cINO80 complex subunit C. (208 aa)
LOC108257257SUMO-conjugating enzyme UBC9-B. (157 aa)
LOC108259600E3 SUMO-protein ligase PIAS1-like isoform X1. (641 aa)
cdk7Cell division protein kinase 7; Belongs to the protein kinase superfamily. (345 aa)
gtf2h5General transcription factor IIH subunit 5 isoform X1. (71 aa)
rfc5Replication factor C subunit 5. (339 aa)
cops4COP9 signalosome complex subunit 4 isoform X2. (406 aa)
LOC108258103Transcriptional repressor protein YY1-like isoform X1. (389 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2286 aa)
parp1Poly [ADP-ribose] polymerase. (1018 aa)
gtf2h3General transcription factor IIH subunit 3 isoform X1. (300 aa)
ercc2TFIIH basal transcription factor complex helicase XPD subunit isoform X1. (761 aa)
xpcDNA repair protein complementing XP-C cells isoform X1. (896 aa)
ENSIPUP00000008363annotation not available (120 aa)
ddb1DNA damage-binding protein 1. (1140 aa)
kxd1kxDL motif-containing protein 1 isoform X2. (187 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (148 aa)
tfptTCF3 fusion partner. (221 aa)
ube2iSUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (177 aa)
cops6COP9 signalosome complex subunit 6. (324 aa)
LOC108275467Nuclear pore complex protein DDB_G0274915-like. (510 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (777 aa)
LOC108258691Actin, cytoplasmic 1. (375 aa)
ercc4DNA repair endonuclease XPF. (899 aa)
nfatc2ipNFATC2-interacting protein. (283 aa)
meiobMeiosis-specific with OB domain-containing protein. (466 aa)
pold3DNA polymerase delta subunit 3 isoform X1. (471 aa)
pold2DNA polymerase delta subunit 2. (467 aa)
ENSIPUP00000003801annotation not available (96 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (310 aa)
rad23bUV excision repair protein RAD23 homolog B. (384 aa)
rfc1Replication factor C subunit 1. (1129 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (606 aa)
cops7aCOP9 signalosome complex subunit 7a. (268 aa)
ENSIPUP00000006818annotation not available (217 aa)
uba52ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
ino80eINO80 complex subunit E. (233 aa)
rpap3RNA polymerase II-associated protein 3. (668 aa)
LOC108271249UV excision repair protein RAD23 homolog A-like isoform X1. (468 aa)
actr5Actin-related protein 5; Belongs to the actin family. (619 aa)
rfc2Replication factor C subunit 2. (357 aa)
nfrkbNuclear factor related to kappa-B-binding protein isoform X1. (1285 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (297 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (671 aa)
rnf111E3 ubiquitin-protein ligase Arkadia isoform X1. (985 aa)
pold1DNA polymerase. (1066 aa)
LOC108264782E3 SUMO-protein ligase PIAS1-like isoform X3. (674 aa)
sumo2-2Small ubiquitin-related modifier. (95 aa)
gtf2h2cGeneral transcription factor IIH subunit 2-like protein. (394 aa)
rbx1E3 ubiquitin-protein ligase RBX1. (108 aa)
LOC108273255ATPase family AAA domain-containing protein 5-like. (927 aa)
chd1lchromodomain-helicase-DNA-binding protein 1-like. (1024 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
LOC108279000E3 ubiquitin-protein ligase RBX1-like. (108 aa)
rcbtb2RCC1 and BTB domain-containing protein 2. (540 aa)
LOC100304682Transcriptional repressor protein YY1. (366 aa)
ercc3TFIIH basal transcription factor complex helicase XPB subunit. (780 aa)
sumo1Small ubiquitin-related modifier. (131 aa)
cops2COP9 signalosome complex subunit 2 isoform X2. (464 aa)
ENSIPUP00000030308annotation not available (162 aa)
cops8COP9 signalosome complex subunit 8. (199 aa)
rcbtb1RCC1 and BTB domain-containing protein 1. (531 aa)
rpa3Replication protein A 14 kDa subunit. (122 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
ercc1DNA excision repair protein ERCC-1. (367 aa)
kctd2BTB/POZ domain-containing protein KCTD2. (266 aa)
mcrs1Microspherule protein 1 isoform X2. (488 aa)
polkDNA polymerase kappa. (927 aa)
LOC108272719INO80 complex subunit D-B-like. (843 aa)
ccnhCyclin-H; Belongs to the cyclin family. (321 aa)
pold4DNA polymerase delta subunit 4. (109 aa)
rfc4Replication factor C subunit 4 isoform X1. (358 aa)
cops5COP9 signalosome complex subunit 5. (334 aa)
gps1COP9 signalosome complex subunit 1. (487 aa)
rpa2Replication protein A 32 kDa subunit. (294 aa)
rps27aUbiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
parp2Poly [ADP-ribose] polymerase. (629 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
atad5ATPase family AAA domain-containing protein 5 isoform X1. (1798 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
ube2nUbiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
cops3COP9 signalosome complex subunit 3. (423 aa)
LOC108272412Replication protein A 32 kDa subunit-like. (251 aa)
cul4acullin-4A; Belongs to the cullin family. (741 aa)
gtf2h1General transcription factor IIH subunit 1. (549 aa)
rfc3Replication factor C subunit 3. (356 aa)
ercc5DNA repair protein complementing XP-G cells. (1107 aa)
bivmBasic immunoglobulin-like variable motif-containing protein isoform X1. (504 aa)
LOC108280745Von Willebrand factor A domain-containing protein 5B1-like isoform X2. (1300 aa)
ino80bINO80 complex subunit B isoform X2. (347 aa)
cetn1Centrin-1. (186 aa)
pole3DNA polymerase epsilon subunit 3. (149 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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