74 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108261899	Histone H2B-like. (117 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (297 aa)
	pex12	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family. (351 aa)
	rnf144a	RBR-type E3 ubiquitin transferase. (293 aa)
	ENSIPUP00000034832	annotation not available (250 aa)
	rtf1	LOW QUALITY PROTEIN: RNA polymerase-associated protein RTF1 homolog. (679 aa)
	LOC108256709	Ubiquitin-conjugating enzyme E2 E2; Belongs to the ubiquitin-conjugating enzyme family. (201 aa)
	selenos	Selenoprotein S. (189 aa)
	rnf181	E3 ubiquitin-protein ligase RNF181. (169 aa)
	ube2a	Ubiquitin conjugating enzyme E2 A. (122 aa)
	LOC108278809	Ubiquitin-conjugating enzyme E2 B-like isoform X1; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	pex10	Peroxisome biogenesis factor 10. (323 aa)
	cinp	Cyclin-dependent kinase 2-interacting protein. (210 aa)
	ube2l3	Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	paf1	RNA polymerase II-associated factor 1 homolog. (559 aa)
	rad18	E3 ubiquitin-protein ligase RAD18 isoform X1. (454 aa)
	slc39a13	Zinc transporter ZIP13 isoform X2. (417 aa)
	yipf4	Protein YIPF. (220 aa)
	LOC108273672	E3 ubiquitin protein ligase. (1041 aa)
	leo1	RNA polymerase-associated protein LEO1. (688 aa)
	ube2n	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	LOC108277237	Ubiquitin-conjugating enzyme E2 D2-like; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	rps27a	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
	LOC108269267	E3 ubiquitin protein ligase. (1002 aa)
	pex2	Peroxisome biogenesis factor 2. (324 aa)
	LOC108268916	Ras-related GTP-binding protein A. (315 aa)
	wdr61	WD repeat-containing protein 61. (305 aa)
	bcl10	B-cell lymphoma/leukemia 10 isoform X1. (248 aa)
	LOC108276978	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	LOC108259060	Ubiquitin-conjugating enzyme E2 A-like isoform X1; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	LOC108262407	Histone H2B; Belongs to the histone H2B family. (164 aa)
	pex13	Peroxisome biogenesis factor 13. (447 aa)
	LOC108262131	Histone H2B-like. (90 aa)
	ube2d2	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	LOC108261379-3	Histone H2B-like. (124 aa)
	LOC108261964	Histone H2B; Belongs to the histone H2B family. (124 aa)
	LOC108280742	PEX5-related protein-like isoform X1. (598 aa)
	cdc73	Parafibromin. (530 aa)
	LOC108272959	Ubiquitin-conjugating enzyme E2 E1; Belongs to the ubiquitin-conjugating enzyme family. (201 aa)
	LOC108261861	Histone H2B; Belongs to the histone H2B family. (125 aa)
	LOC108272957	Ubiquitin-conjugating enzyme E2 E2-like; Belongs to the ubiquitin-conjugating enzyme family. (210 aa)
	wac	WW domain-containing adapter protein with coiled-coil isoform X2. (557 aa)
	ENSIPUP00000017001	annotation not available (67 aa)
	LOC108280665	WW domain-containing adapter protein with coiled-coil-like isoform X1. (507 aa)
	yipf5	Protein YIPF. (256 aa)
	ctr9	RNA polymerase-associated protein CTR9 homolog. (1151 aa)
	ENSIPUP00000013757	annotation not available (100 aa)
	LOC108261379-2	Histone H2B-like. (124 aa)
	LOC108266561	Ubiquitin-conjugating enzyme E2 A-like isoform X1; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	pex5l	PEX5-related protein isoform X2. (609 aa)
	ube2d1	Ubiquitin conjugating enzyme E2 D1. (148 aa)
	LOC108263550	Ubiquitin-conjugating enzyme E2 D2-like isoform X1; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	LOC108261488	Histone H2B; Belongs to the histone H2B family. (124 aa)
	ENSIPUP00000011897	annotation not available (218 aa)
	ENSIPUP00000011444	annotation not available (131 aa)
	pex5	Peroxisomal biogenesis factor 5 isoform X1. (641 aa)
	ENSIPUP00000009144	Histone H2B 3. (118 aa)
	yipf7	Protein YIPF. (249 aa)
	prkdc	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family. (4101 aa)
	kxd1	kxDL motif-containing protein 1 isoform X2. (187 aa)
	pex14	Peroxisomal membrane protein PEX14. (397 aa)
	uba52	ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
	LOC108261983	Histone H2B-like; Belongs to the histone H2B family. (88 aa)
	LOC108265473	Ubiquitin-conjugating enzyme E2 D4 isoform X1; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	LOC108272324	Histone H2B; Belongs to the histone H2B family. (124 aa)
	shprh	E3 ubiquitin-protein ligase SHPRH. (1635 aa)
	rnf152	E3 ubiquitin-protein ligase RNF152. (174 aa)
	ENSIPUP00000002932	annotation not available (108 aa)
	LOC108262673	Histone H2B; Belongs to the histone H2B family. (124 aa)
	ENSIPUP00000002141	annotation not available (67 aa)
	LOC108262617	Histone H2B-like. (103 aa)
	LOC108261379	Histone H2B 1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (124 aa)
	LOC108260489	Histone H2B; Belongs to the histone H2B family. (117 aa)
	ube2v2	Ubiquitin-conjugating enzyme E2 variant 2. (148 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000002141	ENSIPUP00000002932	ENSIPUP00000002141	ENSIPUP00000002932	annotation not available	annotation not available	0.513
ENSIPUP00000002141	ENSIPUP00000013757	ENSIPUP00000002141	ENSIPUP00000013757	annotation not available	annotation not available	0.539
ENSIPUP00000002141	LOC108261899	ENSIPUP00000002141	ENSIPUP00000017542	annotation not available	Histone H2B-like.	0.539
ENSIPUP00000002141	LOC108261983	ENSIPUP00000002141	ENSIPUP00000005897	annotation not available	Histone H2B-like; Belongs to the histone H2B family.	0.537
ENSIPUP00000002141	LOC108269267	ENSIPUP00000002141	ENSIPUP00000021968	annotation not available	E3 ubiquitin protein ligase.	0.470
ENSIPUP00000002141	LOC108273672	ENSIPUP00000002141	ENSIPUP00000026751	annotation not available	E3 ubiquitin protein ligase.	0.470
ENSIPUP00000002141	cdc73	ENSIPUP00000002141	ENSIPUP00000017436	annotation not available	Parafibromin.	0.633
ENSIPUP00000002141	cinp	ENSIPUP00000002141	ENSIPUP00000030657	annotation not available	Cyclin-dependent kinase 2-interacting protein.	0.602
ENSIPUP00000002141	ctr9	ENSIPUP00000002141	ENSIPUP00000015191	annotation not available	RNA polymerase-associated protein CTR9 homolog.	0.673
ENSIPUP00000002141	leo1	ENSIPUP00000002141	ENSIPUP00000026678	annotation not available	RNA polymerase-associated protein LEO1.	0.808
ENSIPUP00000002141	paf1	ENSIPUP00000002141	ENSIPUP00000028666	annotation not available	RNA polymerase II-associated factor 1 homolog.	0.625
ENSIPUP00000002141	rps27a	ENSIPUP00000002141	ENSIPUP00000022626	annotation not available	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]	0.631
ENSIPUP00000002141	rtf1	ENSIPUP00000002141	ENSIPUP00000034819	annotation not available	LOW QUALITY PROTEIN: RNA polymerase-associated protein RTF1 homolog.	0.546
ENSIPUP00000002141	uba52	ENSIPUP00000002141	ENSIPUP00000007381	annotation not available	ubiquitin-60S ribosomal protein L40 isoform X1.	0.593
ENSIPUP00000002141	wdr61	ENSIPUP00000002141	ENSIPUP00000021749	annotation not available	WD repeat-containing protein 61.	0.434
ENSIPUP00000002932	ENSIPUP00000002141	ENSIPUP00000002932	ENSIPUP00000002141	annotation not available	annotation not available	0.513
ENSIPUP00000002932	ENSIPUP00000017001	ENSIPUP00000002932	ENSIPUP00000017001	annotation not available	annotation not available	0.513
ENSIPUP00000002932	LOC108269267	ENSIPUP00000002932	ENSIPUP00000021968	annotation not available	E3 ubiquitin protein ligase.	0.470
ENSIPUP00000002932	LOC108273672	ENSIPUP00000002932	ENSIPUP00000026751	annotation not available	E3 ubiquitin protein ligase.	0.470
ENSIPUP00000002932	cdc73	ENSIPUP00000002932	ENSIPUP00000017436	annotation not available	Parafibromin.	0.633