15 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108280742	PEX5-related protein-like isoform X1. (598 aa)
	LOC108276620	Next to BRCA1 gene 1 protein-like isoform X3. (969 aa)
	pex5l	PEX5-related protein isoform X2. (609 aa)
	atm	Non-specific serine/threonine protein kinase. (3076 aa)
	pex5	Peroxisomal biogenesis factor 5 isoform X1. (641 aa)
	kxd1	kxDL motif-containing protein 1 isoform X2. (187 aa)
	uba52	ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
	pwwp2a	PWWP domain-containing protein 2A. (668 aa)
	rps27a	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
	usp30	Ubiquitin carboxyl-terminal hydrolase. (495 aa)
	LOC108273956	Next to BRCA1 gene 1 protein-like isoform X1. (982 aa)
	gsap	Gamma-secretase-activating protein. (877 aa)
	ILRUN	Uncharacterized protein C6orf106 homolog. (324 aa)
	ilrun	Uncharacterized protein C6orf106 homolog. (283 aa)
	sqstm1	Sequestosome-1. (460 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ILRUN	LOC108273956	ENSIPUP00000026082	ENSIPUP00000028601	Uncharacterized protein C6orf106 homolog.	Next to BRCA1 gene 1 protein-like isoform X1.	0.577
ILRUN	LOC108276620	ENSIPUP00000026082	ENSIPUP00000014883	Uncharacterized protein C6orf106 homolog.	Next to BRCA1 gene 1 protein-like isoform X3.	0.577
ILRUN	LOC108280742	ENSIPUP00000026082	ENSIPUP00000017789	Uncharacterized protein C6orf106 homolog.	PEX5-related protein-like isoform X1.	0.541
ILRUN	gsap	ENSIPUP00000026082	ENSIPUP00000026467	Uncharacterized protein C6orf106 homolog.	Gamma-secretase-activating protein.	0.577
ILRUN	pex5	ENSIPUP00000026082	ENSIPUP00000009892	Uncharacterized protein C6orf106 homolog.	Peroxisomal biogenesis factor 5 isoform X1.	0.541
ILRUN	pex5l	ENSIPUP00000026082	ENSIPUP00000012954	Uncharacterized protein C6orf106 homolog.	PEX5-related protein isoform X2.	0.541
ILRUN	rps27a	ENSIPUP00000026082	ENSIPUP00000022626	Uncharacterized protein C6orf106 homolog.	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]	0.598
ILRUN	sqstm1	ENSIPUP00000026082	ENSIPUP00000019226	Uncharacterized protein C6orf106 homolog.	Sequestosome-1.	0.577
ILRUN	uba52	ENSIPUP00000026082	ENSIPUP00000007381	Uncharacterized protein C6orf106 homolog.	ubiquitin-60S ribosomal protein L40 isoform X1.	0.405
LOC108273956	ILRUN	ENSIPUP00000028601	ENSIPUP00000026082	Next to BRCA1 gene 1 protein-like isoform X1.	Uncharacterized protein C6orf106 homolog.	0.577
LOC108273956	LOC108276620	ENSIPUP00000028601	ENSIPUP00000014883	Next to BRCA1 gene 1 protein-like isoform X1.	Next to BRCA1 gene 1 protein-like isoform X3.	0.998
LOC108273956	LOC108280742	ENSIPUP00000028601	ENSIPUP00000017789	Next to BRCA1 gene 1 protein-like isoform X1.	PEX5-related protein-like isoform X1.	0.971
LOC108273956	atm	ENSIPUP00000028601	ENSIPUP00000012238	Next to BRCA1 gene 1 protein-like isoform X1.	Non-specific serine/threonine protein kinase.	0.939
LOC108273956	gsap	ENSIPUP00000028601	ENSIPUP00000026467	Next to BRCA1 gene 1 protein-like isoform X1.	Gamma-secretase-activating protein.	0.886
LOC108273956	ilrun	ENSIPUP00000028601	ENSIPUP00000037130	Next to BRCA1 gene 1 protein-like isoform X1.	Uncharacterized protein C6orf106 homolog.	0.577
LOC108273956	pex5	ENSIPUP00000028601	ENSIPUP00000009892	Next to BRCA1 gene 1 protein-like isoform X1.	Peroxisomal biogenesis factor 5 isoform X1.	0.971
LOC108273956	pex5l	ENSIPUP00000028601	ENSIPUP00000012954	Next to BRCA1 gene 1 protein-like isoform X1.	PEX5-related protein isoform X2.	0.971
LOC108273956	pwwp2a	ENSIPUP00000028601	ENSIPUP00000035900	Next to BRCA1 gene 1 protein-like isoform X1.	PWWP domain-containing protein 2A.	0.939
LOC108273956	rps27a	ENSIPUP00000028601	ENSIPUP00000022626	Next to BRCA1 gene 1 protein-like isoform X1.	Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]	0.996
LOC108273956	sqstm1	ENSIPUP00000028601	ENSIPUP00000019226	Next to BRCA1 gene 1 protein-like isoform X1.	Sequestosome-1.	0.943