29 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	endog	Endonuclease. (305 aa)
	tlr-5	Toll-like receptor 5 precursor. (647 aa)
	TLR5	Toll-like receptor 5; Belongs to the Toll-like receptor family. (880 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (279 aa)
	irf5	Interferon regulatory factor 5. (478 aa)
	ciita	MHC class II transactivator isoform X1. (1147 aa)
	LOC108275783	Interferon regulatory factor 4-like isoform X2. (383 aa)
	LOC108266215	Uncharacterized protein LOC108266215; Belongs to the Toll-like receptor family. (1041 aa)
	trim8	Putative E3 ubiquitin-protein ligase TRIM8. (564 aa)
	nod2	Nucleotide-binding oligomerization domain-containing protein 2. (981 aa)
	LOC108273898	Interferon regulatory factor 3-like. (462 aa)
	ecsit	Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial isoform X1. (452 aa)
	LOC108265704	Toll-like receptor 9; Belongs to the Toll-like receptor family. (1067 aa)
	LOC108279129	Toll-like receptor 13. (965 aa)
	nod1	Nucleotide-binding oligomerization domain-containing protein 1. (946 aa)
	nlrx1	NLR family member X1 isoform X2. (1001 aa)
	litaf	Lipopolysaccharide-induced tumor necrosis factor-alpha factor-like protein. (159 aa)
	trim32	E3 ubiquitin-protein ligase TRIM32. (674 aa)
	n4bp1	NEDD4-binding protein 1. (841 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (540 aa)
	LOC108272901	E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1. (702 aa)
	LOC108255606	Polyubiquitin-like. (155 aa)
	LOC108255605	Polyubiquitin-like. (158 aa)
	LOC108258270	Toll-like receptor 1. (845 aa)
	tlr3	Toll-like receptor 3 precursor; Belongs to the Toll-like receptor family. (905 aa)
	tlr2	Toll-like receptor 2. (790 aa)
	tbk1	Serine/threonine-protein kinase TBK1 isoform X1. (727 aa)
	trim59	Tripartite motif-containing protein 59. (422 aa)
	gata3	Trans-acting T-cell-specific transcription factor GATA-3 isoform X1. (453 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108255605	LOC108272901	ENSIPUP00000034360	ENSIPUP00000033446	Polyubiquitin-like.	E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1.	0.414
LOC108255605	LOC108273898	ENSIPUP00000034360	ENSIPUP00000024255	Polyubiquitin-like.	Interferon regulatory factor 3-like.	0.713
LOC108255605	myd88	ENSIPUP00000034360	ENSIPUP00000018002	Polyubiquitin-like.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.597
LOC108255605	tbk1	ENSIPUP00000034360	ENSIPUP00000007292	Polyubiquitin-like.	Serine/threonine-protein kinase TBK1 isoform X1.	0.722
LOC108255605	tlr3	ENSIPUP00000034360	ENSIPUP00000001661	Polyubiquitin-like.	Toll-like receptor 3 precursor; Belongs to the Toll-like receptor family.	0.482
LOC108255605	traf6	ENSIPUP00000034360	ENSIPUP00000032978	Polyubiquitin-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.636
LOC108255606	LOC108272901	ENSIPUP00000034352	ENSIPUP00000033446	Polyubiquitin-like.	E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1.	0.414
LOC108255606	LOC108273898	ENSIPUP00000034352	ENSIPUP00000024255	Polyubiquitin-like.	Interferon regulatory factor 3-like.	0.713
LOC108255606	myd88	ENSIPUP00000034352	ENSIPUP00000018002	Polyubiquitin-like.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.597
LOC108255606	tbk1	ENSIPUP00000034352	ENSIPUP00000007292	Polyubiquitin-like.	Serine/threonine-protein kinase TBK1 isoform X1.	0.722
LOC108255606	tlr3	ENSIPUP00000034352	ENSIPUP00000001661	Polyubiquitin-like.	Toll-like receptor 3 precursor; Belongs to the Toll-like receptor family.	0.482
LOC108255606	traf6	ENSIPUP00000034352	ENSIPUP00000032978	Polyubiquitin-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.636
LOC108258270	LOC108265704	ENSIPUP00000000309	ENSIPUP00000037354	Toll-like receptor 1.	Toll-like receptor 9; Belongs to the Toll-like receptor family.	0.405
LOC108258270	LOC108266215	ENSIPUP00000000309	ENSIPUP00000022190	Toll-like receptor 1.	Uncharacterized protein LOC108266215; Belongs to the Toll-like receptor family.	0.439
LOC108258270	LOC108273898	ENSIPUP00000000309	ENSIPUP00000024255	Toll-like receptor 1.	Interferon regulatory factor 3-like.	0.438
LOC108258270	TLR5	ENSIPUP00000000309	ENSIPUP00000016467	Toll-like receptor 1.	Toll-like receptor 5; Belongs to the Toll-like receptor family.	0.523
LOC108258270	myd88	ENSIPUP00000000309	ENSIPUP00000018002	Toll-like receptor 1.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.789
LOC108258270	tlr-5	ENSIPUP00000000309	ENSIPUP00000016445	Toll-like receptor 1.	Toll-like receptor 5 precursor.	0.529
LOC108258270	tlr2	ENSIPUP00000000309	ENSIPUP00000001951	Toll-like receptor 1.	Toll-like receptor 2.	0.987
LOC108258270	tlr3	ENSIPUP00000000309	ENSIPUP00000001661	Toll-like receptor 1.	Toll-like receptor 3 precursor; Belongs to the Toll-like receptor family.	0.462