28 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108255605	Polyubiquitin-like. (158 aa)
	LOC108265704	Toll-like receptor 9; Belongs to the Toll-like receptor family. (1067 aa)
	LOC108258270	Toll-like receptor 1. (845 aa)
	LOC100304649	Granzyme B; Belongs to the peptidase S1 family. (253 aa)
	LOC108268446	Apoptosis-enhancing nuclease-like. (348 aa)
	LOC108261415	Histone H2A; Belongs to the histone H2A family. (128 aa)
	ifi30	Gamma-interferon-inducible lysosomal thiol reductase. (263 aa)
	LOC108271892	Interleukin-12 receptor subunit beta-2-like. (793 aa)
	mrc1	Macrophage mannose receptor 1 isoform X2. (1454 aa)
	socs6	Suppressor of cytokine signaling 6 isoform X1. (527 aa)
	LOC108280710	Perforin-1-like. (588 aa)
	LOC108261415-2	Histone H2A. (128 aa)
	LOC108261415-3	Histone H2A. (128 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (279 aa)
	LOC100304651	Granzyme-like III precursor; Belongs to the peptidase S1 family. (254 aa)
	LOC108267046	Granzyme B(G,H)-like; Belongs to the peptidase S1 family. (254 aa)
	LOC108261415-4	Histone H2A. (128 aa)
	LOC108261415-5	Histone H2A. (128 aa)
	LOC108277410	Cell adhesion molecule 1-like isoform X3. (422 aa)
	socs1	Suppressor of cytokine signaling 1. (230 aa)
	LOC108259599	Apoptosis regulator BAX-like isoform X1. (203 aa)
	LOC108270970	Apoptosis regulator BAX-like. (202 aa)
	bax	Apoptosis regulator BAX. (189 aa)
	tbx3	T-box transcription factor TBX3 isoform X2. (708 aa)
	LOC108274750	Apoptosis regulator BAX-like. (199 aa)
	nccrp1	NCC receptor protein 1. (235 aa)
	LOC108270847	Uncharacterized protein LOC108270847. (214 aa)
	LOC108255606	Polyubiquitin-like. (155 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100304649	LOC108255605	ENSIPUP00000001201	ENSIPUP00000034360	Granzyme B; Belongs to the peptidase S1 family.	Polyubiquitin-like.	0.427
LOC100304649	LOC108255606	ENSIPUP00000001201	ENSIPUP00000034352	Granzyme B; Belongs to the peptidase S1 family.	Polyubiquitin-like.	0.427
LOC100304649	LOC108277410	ENSIPUP00000001201	ENSIPUP00000020011	Granzyme B; Belongs to the peptidase S1 family.	Cell adhesion molecule 1-like isoform X3.	0.512
LOC100304649	LOC108280710	ENSIPUP00000001201	ENSIPUP00000012758	Granzyme B; Belongs to the peptidase S1 family.	Perforin-1-like.	0.568
LOC100304649	nccrp1	ENSIPUP00000001201	ENSIPUP00000028125	Granzyme B; Belongs to the peptidase S1 family.	NCC receptor protein 1.	0.512
LOC100304651	LOC108255605	ENSIPUP00000018570	ENSIPUP00000034360	Granzyme-like III precursor; Belongs to the peptidase S1 family.	Polyubiquitin-like.	0.450
LOC100304651	LOC108255606	ENSIPUP00000018570	ENSIPUP00000034352	Granzyme-like III precursor; Belongs to the peptidase S1 family.	Polyubiquitin-like.	0.450
LOC100304651	LOC108267046	ENSIPUP00000018570	ENSIPUP00000018584	Granzyme-like III precursor; Belongs to the peptidase S1 family.	Granzyme B(G,H)-like; Belongs to the peptidase S1 family.	0.900
LOC100304651	LOC108277410	ENSIPUP00000018570	ENSIPUP00000020011	Granzyme-like III precursor; Belongs to the peptidase S1 family.	Cell adhesion molecule 1-like isoform X3.	0.567
LOC100304651	LOC108280710	ENSIPUP00000018570	ENSIPUP00000012758	Granzyme-like III precursor; Belongs to the peptidase S1 family.	Perforin-1-like.	0.568
LOC100304651	nccrp1	ENSIPUP00000018570	ENSIPUP00000028125	Granzyme-like III precursor; Belongs to the peptidase S1 family.	NCC receptor protein 1.	0.522
LOC108255605	LOC100304649	ENSIPUP00000034360	ENSIPUP00000001201	Polyubiquitin-like.	Granzyme B; Belongs to the peptidase S1 family.	0.427
LOC108255605	LOC100304651	ENSIPUP00000034360	ENSIPUP00000018570	Polyubiquitin-like.	Granzyme-like III precursor; Belongs to the peptidase S1 family.	0.450
LOC108255605	LOC108261415	ENSIPUP00000034360	ENSIPUP00000005187	Polyubiquitin-like.	Histone H2A; Belongs to the histone H2A family.	0.406
LOC108255605	LOC108261415-2	ENSIPUP00000034360	ENSIPUP00000013620	Polyubiquitin-like.	Histone H2A.	0.406
LOC108255605	LOC108261415-3	ENSIPUP00000034360	ENSIPUP00000017819	Polyubiquitin-like.	Histone H2A.	0.406
LOC108255605	LOC108261415-4	ENSIPUP00000034360	ENSIPUP00000018868	Polyubiquitin-like.	Histone H2A.	0.406
LOC108255605	LOC108261415-5	ENSIPUP00000034360	ENSIPUP00000018947	Polyubiquitin-like.	Histone H2A.	0.406
LOC108255605	LOC108267046	ENSIPUP00000034360	ENSIPUP00000018584	Polyubiquitin-like.	Granzyme B(G,H)-like; Belongs to the peptidase S1 family.	0.450
LOC108255605	LOC108277410	ENSIPUP00000034360	ENSIPUP00000020011	Polyubiquitin-like.	Cell adhesion molecule 1-like isoform X3.	0.458