56 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	uchl1	Ubiquitin carboxyl-terminal hydrolase. (218 aa)
	smc4	Structural maintenance of chromosomes protein. (1288 aa)
	adipor1	Adiponectin receptor protein 1. (383 aa)
	ldha	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (333 aa)
	eef2k	Eukaryotic elongation factor 2 kinase. (696 aa)
	rps15	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (147 aa)
	tpi1	Triosephosphate isomerase. (256 aa)
	LOC108266696	Gamma-aminobutyric acid receptor-associated protein-like 1. (117 aa)
	rpl12	60S ribosomal protein L12 isoform X1; Belongs to the universal ribosomal protein uL11 family. (171 aa)
	pgk1	Phosphoglycerate kinase. (417 aa)
	LOC108258456	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (254 aa)
	LOC108255789	Elongation factor 2 isoform X1. (907 aa)
	mcm3	DNA helicase; Belongs to the MCM family. (815 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	ncapd2	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1381 aa)
	rplp0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
	slc16a3	Monocarboxylate transporter 4. (520 aa)
	cdc6	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (587 aa)
	cdk2	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (301 aa)
	abcc5	Multidrug resistance-associated protein 5. (1320 aa)
	ncapg	Condensin complex subunit 3 isoform X2. (1034 aa)
	LOC108255998	Arrestin domain-containing protein 3-like. (462 aa)
	rpl13a	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (211 aa)
	cdc20	Cell division cycle protein 20 homolog. (538 aa)
	LOC108272398	Transcription factor E2F3-like. (413 aa)
	itm2a	Integral membrane protein 2A. (249 aa)
	acsbg2	LOW QUALITY PROTEIN: long-chain-fatty-acid--CoA ligase ACSBG2. (711 aa)
	ppara	Peroxisome proliferator-activated receptor alpha isoform X1. (555 aa)
	prkca	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (668 aa)
	chek2	Serine/threonine-protein kinase Chk2. (539 aa)
	rps11	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (171 aa)
	cdk1	Cyclin-dependent kinase 1 isoform X1; Belongs to the protein kinase superfamily. (302 aa)
	ccna2	cyclin-A2; Belongs to the cyclin family. (423 aa)
	aldoa	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family. (364 aa)
	jarid2	Protein Jumonji. (1271 aa)
	mad2l1	Mitotic Spindle assembly checkpoint protein MAD2A. (202 aa)
	bbox1	Gamma-butyrobetaine dioxygenase. (434 aa)
	dhcr7	7-dehydrocholesterol reductase. (478 aa)
	fabp3	Fatty acid-binding protein, heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (133 aa)
	espl1	Separin. (2166 aa)
	pdk4	Protein-serine/threonine kinase. (419 aa)
	slc43a2	Large neutral amino acids transporter small subunit 4. (571 aa)
	ldhb	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (334 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (297 aa)
	e2f3	Transcription factor E2F3. (416 aa)
	mcm4	DNA helicase; Belongs to the MCM family. (845 aa)
	pgam1	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (254 aa)
	irs2	Insulin receptor substrate 2. (1071 aa)
	rpl10a	60S ribosomal protein L10a; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL1 family. (216 aa)
	zbtb16	Zinc finger and BTB domain-containing protein 16. (671 aa)
	LOC108271000	Elongation factor 2. (858 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (185 aa)
	plk1	Serine/threonine-protein kinase PLK. (591 aa)
	fbxo32	F-box only protein 32. (356 aa)
	acacb	LOW QUALITY PROTEIN: acetyl-CoA carboxylase 2. (2294 aa)
	rps13	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108255789	eef2k	ENSIPUP00000011671	ENSIPUP00000009049	Elongation factor 2 isoform X1.	Eukaryotic elongation factor 2 kinase.	0.734
LOC108255789	gapdh	ENSIPUP00000011671	ENSIPUP00000011980	Elongation factor 2 isoform X1.	Glyceraldehyde-3-phosphate dehydrogenase.	0.640
LOC108255789	jarid2	ENSIPUP00000011671	ENSIPUP00000025855	Elongation factor 2 isoform X1.	Protein Jumonji.	0.501
LOC108255789	pdk4	ENSIPUP00000011671	ENSIPUP00000034358	Elongation factor 2 isoform X1.	Protein-serine/threonine kinase.	0.476
LOC108255789	pgk1	ENSIPUP00000011671	ENSIPUP00000011285	Elongation factor 2 isoform X1.	Phosphoglycerate kinase.	0.674
LOC108255789	rpl10a	ENSIPUP00000011671	ENSIPUP00000001043	Elongation factor 2 isoform X1.	60S ribosomal protein L10a; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL1 family.	0.918
LOC108255789	rpl12	ENSIPUP00000011671	ENSIPUP00000011130	Elongation factor 2 isoform X1.	60S ribosomal protein L12 isoform X1; Belongs to the universal ribosomal protein uL11 family.	0.956
LOC108255789	rpl13a	ENSIPUP00000011671	ENSIPUP00000020794	Elongation factor 2 isoform X1.	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.956
LOC108255789	rplp0	ENSIPUP00000011671	ENSIPUP00000016747	Elongation factor 2 isoform X1.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.988
LOC108255789	rps11	ENSIPUP00000011671	ENSIPUP00000023041	Elongation factor 2 isoform X1.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.975
LOC108255789	rps13	ENSIPUP00000011671	ENSIPUP00000006733	Elongation factor 2 isoform X1.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.944
LOC108255789	rps15	ENSIPUP00000011671	ENSIPUP00000010234	Elongation factor 2 isoform X1.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.975
LOC108255789	slc16a3	ENSIPUP00000011671	ENSIPUP00000017424	Elongation factor 2 isoform X1.	Monocarboxylate transporter 4.	0.459
LOC108255789	slc43a2	ENSIPUP00000011671	ENSIPUP00000034488	Elongation factor 2 isoform X1.	Large neutral amino acids transporter small subunit 4.	0.402
LOC108255789	tpi1	ENSIPUP00000011671	ENSIPUP00000010273	Elongation factor 2 isoform X1.	Triosephosphate isomerase.	0.694
LOC108255998	LOC108266696	ENSIPUP00000020675	ENSIPUP00000010382	Arrestin domain-containing protein 3-like.	Gamma-aminobutyric acid receptor-associated protein-like 1.	0.431
LOC108255998	adipor1	ENSIPUP00000020675	ENSIPUP00000008116	Arrestin domain-containing protein 3-like.	Adiponectin receptor protein 1.	0.531
LOC108255998	bbox1	ENSIPUP00000020675	ENSIPUP00000029174	Arrestin domain-containing protein 3-like.	Gamma-butyrobetaine dioxygenase.	0.554
LOC108255998	eef2k	ENSIPUP00000020675	ENSIPUP00000009049	Arrestin domain-containing protein 3-like.	Eukaryotic elongation factor 2 kinase.	0.471
LOC108255998	pdk4	ENSIPUP00000020675	ENSIPUP00000034358	Arrestin domain-containing protein 3-like.	Protein-serine/threonine kinase.	0.531