15 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	reps2	ralBP1-associated Eps domain-containing protein 2 isoform X3. (414 aa)
	reps1	ralBP1-associated Eps domain-containing protein 1 isoform X2. (797 aa)
	LOC108280681	Epidermal growth factor receptor substrate 15-like 1 isoform X1. (880 aa)
	ENSIPUP00000019729	annotation not available (131 aa)
	LOC108269989	Intersectin-2-like isoform X1. (1695 aa)
	LOC108276895	EH domain-containing protein 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (535 aa)
	LOC108270320	EH domain-containing protein 4-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (546 aa)
	itsn1	Intersectin-1 isoform X2. (1526 aa)
	LOC108260244	EH domain-containing protein 2-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (552 aa)
	eps15l1	Epidermal growth factor receptor substrate 15-like 1 isoform X1. (911 aa)
	LOC101154661	EH domain-containing protein 2 isoform X2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (543 aa)
	ENSIPUP00000000751	annotation not available (110 aa)
	eps15	Epidermal growth factor receptor substrate 15 isoform X1. (1028 aa)
	LOC108268895	EH domain-containing protein 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (534 aa)
	LOC108258807	EH domain-containing protein 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (535 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000019729	LOC108269989	ENSIPUP00000019729	ENSIPUP00000020654	annotation not available	Intersectin-2-like isoform X1.	0.954
ENSIPUP00000019729	LOC108280681	ENSIPUP00000019729	ENSIPUP00000009479	annotation not available	Epidermal growth factor receptor substrate 15-like 1 isoform X1.	0.994
ENSIPUP00000019729	eps15	ENSIPUP00000019729	ENSIPUP00000002254	annotation not available	Epidermal growth factor receptor substrate 15 isoform X1.	0.994
ENSIPUP00000019729	eps15l1	ENSIPUP00000019729	ENSIPUP00000037110	annotation not available	Epidermal growth factor receptor substrate 15-like 1 isoform X1.	0.994
ENSIPUP00000019729	itsn1	ENSIPUP00000019729	ENSIPUP00000029900	annotation not available	Intersectin-1 isoform X2.	0.947
ENSIPUP00000019729	reps1	ENSIPUP00000019729	ENSIPUP00000008511	annotation not available	ralBP1-associated Eps domain-containing protein 1 isoform X2.	0.961
ENSIPUP00000019729	reps2	ENSIPUP00000019729	ENSIPUP00000003877	annotation not available	ralBP1-associated Eps domain-containing protein 2 isoform X3.	0.961
LOC101154661	LOC108260244	ENSIPUP00000000247	ENSIPUP00000035892	EH domain-containing protein 2 isoform X2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	EH domain-containing protein 2-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.901
LOC108260244	LOC101154661	ENSIPUP00000035892	ENSIPUP00000000247	EH domain-containing protein 2-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	EH domain-containing protein 2 isoform X2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.901
LOC108268895	LOC108276895	ENSIPUP00000003999	ENSIPUP00000025711	EH domain-containing protein 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	EH domain-containing protein 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.900
LOC108269989	ENSIPUP00000019729	ENSIPUP00000020654	ENSIPUP00000019729	Intersectin-2-like isoform X1.	annotation not available	0.954
LOC108269989	LOC108280681	ENSIPUP00000020654	ENSIPUP00000009479	Intersectin-2-like isoform X1.	Epidermal growth factor receptor substrate 15-like 1 isoform X1.	0.994
LOC108269989	eps15	ENSIPUP00000020654	ENSIPUP00000002254	Intersectin-2-like isoform X1.	Epidermal growth factor receptor substrate 15 isoform X1.	0.994
LOC108269989	eps15l1	ENSIPUP00000020654	ENSIPUP00000037110	Intersectin-2-like isoform X1.	Epidermal growth factor receptor substrate 15-like 1 isoform X1.	0.994
LOC108269989	itsn1	ENSIPUP00000020654	ENSIPUP00000029900	Intersectin-2-like isoform X1.	Intersectin-1 isoform X2.	0.948
LOC108269989	reps1	ENSIPUP00000020654	ENSIPUP00000008511	Intersectin-2-like isoform X1.	ralBP1-associated Eps domain-containing protein 1 isoform X2.	0.962
LOC108269989	reps2	ENSIPUP00000020654	ENSIPUP00000003877	Intersectin-2-like isoform X1.	ralBP1-associated Eps domain-containing protein 2 isoform X3.	0.961
LOC108276895	LOC108268895	ENSIPUP00000025711	ENSIPUP00000003999	EH domain-containing protein 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	EH domain-containing protein 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.900
LOC108280681	ENSIPUP00000019729	ENSIPUP00000009479	ENSIPUP00000019729	Epidermal growth factor receptor substrate 15-like 1 isoform X1.	annotation not available	0.994
LOC108280681	LOC108269989	ENSIPUP00000009479	ENSIPUP00000020654	Epidermal growth factor receptor substrate 15-like 1 isoform X1.	Intersectin-2-like isoform X1.	0.994