10 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108272206	Tensin-2-like isoform X2. (1419 aa)
	LOC108269686	annotation not available (442 aa)
	LOC108257992	Tensin-3-like. (280 aa)
	tns3	Tensin-3 isoform X2. (934 aa)
	dnajc6	Putative tyrosine-protein phosphatase auxilin isoform X1. (894 aa)
	tns1	Tensin-1 isoform X1. (1869 aa)
	tns2	Tensin-2 isoform X3. (1717 aa)
	LOC108276937	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2-like isoform X1. (512 aa)
	pten	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family. (402 aa)
	gak	cyclin-G-associated kinase isoform X2. (1287 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108257992	gak	ENSIPUP00000021186	ENSIPUP00000001788	Tensin-3-like.	cyclin-G-associated kinase isoform X2.	0.710
LOC108269686	gak	ENSIPUP00000026656	ENSIPUP00000001788	annotation not available	cyclin-G-associated kinase isoform X2.	0.648
LOC108269686	pten	ENSIPUP00000026656	ENSIPUP00000004920	annotation not available	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	0.901
LOC108272206	gak	ENSIPUP00000029801	ENSIPUP00000001788	Tensin-2-like isoform X2.	cyclin-G-associated kinase isoform X2.	0.710
LOC108276937	gak	ENSIPUP00000005220	ENSIPUP00000001788	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2-like isoform X1.	cyclin-G-associated kinase isoform X2.	0.648
dnajc6	gak	ENSIPUP00000010754	ENSIPUP00000001788	Putative tyrosine-protein phosphatase auxilin isoform X1.	cyclin-G-associated kinase isoform X2.	0.975
gak	LOC108257992	ENSIPUP00000001788	ENSIPUP00000021186	cyclin-G-associated kinase isoform X2.	Tensin-3-like.	0.710
gak	LOC108269686	ENSIPUP00000001788	ENSIPUP00000026656	cyclin-G-associated kinase isoform X2.	annotation not available	0.648
gak	LOC108272206	ENSIPUP00000001788	ENSIPUP00000029801	cyclin-G-associated kinase isoform X2.	Tensin-2-like isoform X2.	0.710
gak	LOC108276937	ENSIPUP00000001788	ENSIPUP00000005220	cyclin-G-associated kinase isoform X2.	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2-like isoform X1.	0.648
gak	dnajc6	ENSIPUP00000001788	ENSIPUP00000010754	cyclin-G-associated kinase isoform X2.	Putative tyrosine-protein phosphatase auxilin isoform X1.	0.975
gak	pten	ENSIPUP00000001788	ENSIPUP00000004920	cyclin-G-associated kinase isoform X2.	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	0.648
gak	tns1	ENSIPUP00000001788	ENSIPUP00000010409	cyclin-G-associated kinase isoform X2.	Tensin-1 isoform X1.	0.710
gak	tns2	ENSIPUP00000001788	ENSIPUP00000010103	cyclin-G-associated kinase isoform X2.	Tensin-2 isoform X3.	0.710
gak	tns3	ENSIPUP00000001788	ENSIPUP00000019135	cyclin-G-associated kinase isoform X2.	Tensin-3 isoform X2.	0.710
pten	LOC108269686	ENSIPUP00000004920	ENSIPUP00000026656	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	annotation not available	0.901
pten	gak	ENSIPUP00000004920	ENSIPUP00000001788	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	cyclin-G-associated kinase isoform X2.	0.648
tns1	gak	ENSIPUP00000010409	ENSIPUP00000001788	Tensin-1 isoform X1.	cyclin-G-associated kinase isoform X2.	0.710
tns2	gak	ENSIPUP00000010103	ENSIPUP00000001788	Tensin-2 isoform X3.	cyclin-G-associated kinase isoform X2.	0.710
tns3	gak	ENSIPUP00000019135	ENSIPUP00000001788	Tensin-3 isoform X2.	cyclin-G-associated kinase isoform X2.	0.710