(12 nodes) HAUS complex, and Ajuba-like network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	wtip	WT1 interacting protein. (665 aa)
	LOC113578326	Ajuba LIM protein. (698 aa)
	haus3	HAUS augmin-like complex, subunit 3. (638 aa)
	haus7	Uncharacterized protein. (357 aa)
	haus4	Uncharacterized protein. (365 aa)
	haus8	Si:ch211-153a8.4. (357 aa)
	haus1	Uncharacterized protein. (273 aa)
	haus2	Uncharacterized protein. (201 aa)
	haus5	Uncharacterized protein. (650 aa)
	haus6	HAUS6_N domain-containing protein. (782 aa)
	ENSEEEP00000044603	Uncharacterized protein. (243 aa)
	LIMD1	Uncharacterized protein. (618 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000044603	LIMD1	ENSEEEP00000044603	ENSEEEP00000048715	Uncharacterized protein.	Uncharacterized protein.	0.507
ENSEEEP00000044603	LOC113578326	ENSEEEP00000044603	ENSEEEP00000011773	Uncharacterized protein.	Ajuba LIM protein.	0.507
ENSEEEP00000044603	haus4	ENSEEEP00000044603	ENSEEEP00000016119	Uncharacterized protein.	Uncharacterized protein.	0.507
ENSEEEP00000044603	wtip	ENSEEEP00000044603	ENSEEEP00000003793	Uncharacterized protein.	WT1 interacting protein.	0.507
LIMD1	ENSEEEP00000044603	ENSEEEP00000048715	ENSEEEP00000044603	Uncharacterized protein.	Uncharacterized protein.	0.507
LIMD1	LOC113578326	ENSEEEP00000048715	ENSEEEP00000011773	Uncharacterized protein.	Ajuba LIM protein.	0.519
LIMD1	haus1	ENSEEEP00000048715	ENSEEEP00000025476	Uncharacterized protein.	Uncharacterized protein.	0.753
LIMD1	haus3	ENSEEEP00000048715	ENSEEEP00000012118	Uncharacterized protein.	HAUS augmin-like complex, subunit 3.	0.740
LIMD1	haus5	ENSEEEP00000048715	ENSEEEP00000037223	Uncharacterized protein.	Uncharacterized protein.	0.688
LIMD1	haus7	ENSEEEP00000048715	ENSEEEP00000013042	Uncharacterized protein.	Uncharacterized protein.	0.611
LIMD1	haus8	ENSEEEP00000048715	ENSEEEP00000024840	Uncharacterized protein.	Si:ch211-153a8.4.	0.742
LOC113578326	ENSEEEP00000044603	ENSEEEP00000011773	ENSEEEP00000044603	Ajuba LIM protein.	Uncharacterized protein.	0.507
LOC113578326	LIMD1	ENSEEEP00000011773	ENSEEEP00000048715	Ajuba LIM protein.	Uncharacterized protein.	0.519
LOC113578326	haus1	ENSEEEP00000011773	ENSEEEP00000025476	Ajuba LIM protein.	Uncharacterized protein.	0.753
LOC113578326	haus3	ENSEEEP00000011773	ENSEEEP00000012118	Ajuba LIM protein.	HAUS augmin-like complex, subunit 3.	0.740
LOC113578326	haus5	ENSEEEP00000011773	ENSEEEP00000037223	Ajuba LIM protein.	Uncharacterized protein.	0.688
LOC113578326	haus7	ENSEEEP00000011773	ENSEEEP00000013042	Ajuba LIM protein.	Uncharacterized protein.	0.611
LOC113578326	haus8	ENSEEEP00000011773	ENSEEEP00000024840	Ajuba LIM protein.	Si:ch211-153a8.4.	0.742
LOC113578326	wtip	ENSEEEP00000011773	ENSEEEP00000003793	Ajuba LIM protein.	WT1 interacting protein.	0.519
haus1	LIMD1	ENSEEEP00000025476	ENSEEEP00000048715	Uncharacterized protein.	Uncharacterized protein.	0.753