(14 nodes) Glutamate receptor clustering, and SAPAP family network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSEEEP00000000719	Uncharacterized protein. (373 aa)
	LOC113584421	SH3 and multiple ankyrin repeat domains 3b. (1602 aa)
	LOC113580523	SH3 and multiple ankyrin repeat domains 3a. (1676 aa)
	LOC113568487	Uncharacterized protein. (415 aa)
	ENSEEEP00000021353	SH3 domain-containing protein. (154 aa)
	dlg1	Uncharacterized protein; Belongs to the MAGUK family. (908 aa)
	ENSEEEP00000021788	PDZ domain-containing protein. (271 aa)
	ENSEEEP00000027668	Uncharacterized protein. (251 aa)
	SHANK2	SH3 and multiple ankyrin repeat domains 2. (1411 aa)
	ENSEEEP00000029467	Discs, large (Drosophila) homolog-associated protein 2a. (546 aa)
	dlgap3	Discs, large (Drosophila) homolog-associated protein 3. (940 aa)
	ENSEEEP00000033237	Guanylate kinase-like domain-containing protein. (284 aa)
	ENSEEEP00000033418	Discs, large (Drosophila) homolog-associated protein 1b. (734 aa)
	ENSEEEP00000051723	Uncharacterized protein. (284 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000000719	ENSEEEP00000021353	ENSEEEP00000000719	ENSEEEP00000021353	Uncharacterized protein.	SH3 domain-containing protein.	0.541
ENSEEEP00000000719	ENSEEEP00000021788	ENSEEEP00000000719	ENSEEEP00000021788	Uncharacterized protein.	PDZ domain-containing protein.	0.670
ENSEEEP00000000719	ENSEEEP00000027668	ENSEEEP00000000719	ENSEEEP00000027668	Uncharacterized protein.	Uncharacterized protein.	0.541
ENSEEEP00000000719	ENSEEEP00000029467	ENSEEEP00000000719	ENSEEEP00000029467	Uncharacterized protein.	Discs, large (Drosophila) homolog-associated protein 2a.	0.866
ENSEEEP00000000719	ENSEEEP00000033237	ENSEEEP00000000719	ENSEEEP00000033237	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.541
ENSEEEP00000000719	ENSEEEP00000033418	ENSEEEP00000000719	ENSEEEP00000033418	Uncharacterized protein.	Discs, large (Drosophila) homolog-associated protein 1b.	0.736
ENSEEEP00000000719	ENSEEEP00000051723	ENSEEEP00000000719	ENSEEEP00000051723	Uncharacterized protein.	Uncharacterized protein.	0.870
ENSEEEP00000000719	LOC113568487	ENSEEEP00000000719	ENSEEEP00000014801	Uncharacterized protein.	Uncharacterized protein.	0.541
ENSEEEP00000000719	LOC113580523	ENSEEEP00000000719	ENSEEEP00000014446	Uncharacterized protein.	SH3 and multiple ankyrin repeat domains 3a.	0.670
ENSEEEP00000000719	LOC113584421	ENSEEEP00000000719	ENSEEEP00000008304	Uncharacterized protein.	SH3 and multiple ankyrin repeat domains 3b.	0.670
ENSEEEP00000000719	SHANK2	ENSEEEP00000000719	ENSEEEP00000029386	Uncharacterized protein.	SH3 and multiple ankyrin repeat domains 2.	0.587
ENSEEEP00000000719	dlg1	ENSEEEP00000000719	ENSEEEP00000021643	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.541
ENSEEEP00000000719	dlgap3	ENSEEEP00000000719	ENSEEEP00000032810	Uncharacterized protein.	Discs, large (Drosophila) homolog-associated protein 3.	0.427
ENSEEEP00000021353	ENSEEEP00000000719	ENSEEEP00000021353	ENSEEEP00000000719	SH3 domain-containing protein.	Uncharacterized protein.	0.541
ENSEEEP00000021353	ENSEEEP00000021788	ENSEEEP00000021353	ENSEEEP00000021788	SH3 domain-containing protein.	PDZ domain-containing protein.	0.539
ENSEEEP00000021353	ENSEEEP00000027668	ENSEEEP00000021353	ENSEEEP00000027668	SH3 domain-containing protein.	Uncharacterized protein.	0.809
ENSEEEP00000021353	ENSEEEP00000029467	ENSEEEP00000021353	ENSEEEP00000029467	SH3 domain-containing protein.	Discs, large (Drosophila) homolog-associated protein 2a.	0.541
ENSEEEP00000021353	ENSEEEP00000033237	ENSEEEP00000021353	ENSEEEP00000033237	SH3 domain-containing protein.	Guanylate kinase-like domain-containing protein.	0.862
ENSEEEP00000021353	ENSEEEP00000033418	ENSEEEP00000021353	ENSEEEP00000033418	SH3 domain-containing protein.	Discs, large (Drosophila) homolog-associated protein 1b.	0.541
ENSEEEP00000021353	ENSEEEP00000051723	ENSEEEP00000021353	ENSEEEP00000051723	SH3 domain-containing protein.	Uncharacterized protein.	0.453