(23 nodes) Microtubule plus-end binding, and NudC family network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gkap1	G kinase anchoring protein 1. (369 aa)
	LOC113586551	Uncharacterized protein. (273 aa)
	CLASP1	Cytoplasmic linker associated protein 1. (1475 aa)
	LOC113580999	CAP-GLY domain containing linker protein 2. (935 aa)
	nudc	CS domain-containing protein. (337 aa)
	mapre2	Uncharacterized protein. (331 aa)
	clasp1	Cytoplasmic linker associated protein 1a. (1520 aa)
	ENSEEEP00000025027	Uncharacterized protein. (278 aa)
	ENSEEEP00000028716	Uncharacterized protein. (65 aa)
	clasp2	Cytoplasmic linker associated protein 2. (1289 aa)
	tbc1d31	Uncharacterized protein. (1075 aa)
	LOC113579076	Uncharacterized protein. (296 aa)
	eml1	Echinoderm microtubule associated protein like 1. (838 aa)
	ENSEEEP00000036623	Uncharacterized protein. (377 aa)
	ndel1	NUDE_C domain-containing protein. (342 aa)
	ENSEEEP00000041610	Uncharacterized protein. (318 aa)
	LOC113572820	NUDE_C domain-containing protein. (350 aa)
	mapre3	Uncharacterized protein. (263 aa)
	nudcd3	CS domain-containing protein. (359 aa)
	ENSEEEP00000045801	Uncharacterized protein. (115 aa)
	nudcd2	CS domain-containing protein. (156 aa)
	clip1	CAP-GLY domain containing linker protein 1a. (1503 aa)
	LOC113576381	Uncharacterized protein. (258 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLASP1	LOC113576381	ENSEEEP00000006911	ENSEEEP00000051937	Cytoplasmic linker associated protein 1.	Uncharacterized protein.	0.450
CLASP1	LOC113579076	ENSEEEP00000006911	ENSEEEP00000034235	Cytoplasmic linker associated protein 1.	Uncharacterized protein.	0.450
CLASP1	nudc	ENSEEEP00000006911	ENSEEEP00000017320	Cytoplasmic linker associated protein 1.	CS domain-containing protein.	0.668
CLASP1	nudcd2	ENSEEEP00000006911	ENSEEEP00000048402	Cytoplasmic linker associated protein 1.	CS domain-containing protein.	0.512
CLASP1	nudcd3	ENSEEEP00000006911	ENSEEEP00000045573	Cytoplasmic linker associated protein 1.	CS domain-containing protein.	0.512
ENSEEEP00000025027	LOC113576381	ENSEEEP00000025027	ENSEEEP00000051937	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSEEEP00000025027	LOC113579076	ENSEEEP00000025027	ENSEEEP00000034235	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSEEEP00000025027	LOC113586551	ENSEEEP00000025027	ENSEEEP00000003646	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSEEEP00000025027	mapre2	ENSEEEP00000025027	ENSEEEP00000022266	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSEEEP00000025027	mapre3	ENSEEEP00000025027	ENSEEEP00000043796	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSEEEP00000025027	nudc	ENSEEEP00000025027	ENSEEEP00000017320	Uncharacterized protein.	CS domain-containing protein.	0.518
ENSEEEP00000028716	LOC113576381	ENSEEEP00000028716	ENSEEEP00000051937	Uncharacterized protein.	Uncharacterized protein.	0.450
ENSEEEP00000028716	LOC113579076	ENSEEEP00000028716	ENSEEEP00000034235	Uncharacterized protein.	Uncharacterized protein.	0.450
ENSEEEP00000028716	nudc	ENSEEEP00000028716	ENSEEEP00000017320	Uncharacterized protein.	CS domain-containing protein.	0.668
ENSEEEP00000028716	nudcd2	ENSEEEP00000028716	ENSEEEP00000048402	Uncharacterized protein.	CS domain-containing protein.	0.512
ENSEEEP00000028716	nudcd3	ENSEEEP00000028716	ENSEEEP00000045573	Uncharacterized protein.	CS domain-containing protein.	0.512
ENSEEEP00000036623	LOC113576381	ENSEEEP00000036623	ENSEEEP00000051937	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSEEEP00000036623	LOC113579076	ENSEEEP00000036623	ENSEEEP00000034235	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSEEEP00000036623	LOC113586551	ENSEEEP00000036623	ENSEEEP00000003646	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSEEEP00000036623	mapre2	ENSEEEP00000036623	ENSEEEP00000022266	Uncharacterized protein.	Uncharacterized protein.	0.545