(15 nodes) Lipid transport protein, beta-sheet shell, and Apolipoprotein A/E network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSEEEP00000000655	Uncharacterized protein. (128 aa)
	LOC113578327	Uncharacterized protein. (258 aa)
	LOC113586101	Vitellogenin domain-containing protein. (1493 aa)
	LOC113568398	Uncharacterized protein. (255 aa)
	LOC113568397	Uncharacterized protein. (279 aa)
	apoc1	Uncharacterized protein. (86 aa)
	apoe	Uncharacterized protein. (273 aa)
	LOC113586104	Vitellogenin domain-containing protein. (1311 aa)
	LOC113586100	DUF1944 domain-containing protein. (234 aa)
	LOC113570568	Apolipoprotein Bb, tandem duplicate 1. (3711 aa)
	apob	Apolipoprotein Ba. (4369 aa)
	Mttp	Uncharacterized protein. (195 aa)
	LOC113589139	Uncharacterized protein. (248 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (486 aa)
	LOC113581916	Vitellogenin 3, phosvitinless. (1239 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000000655	LOC113568398	ENSEEEP00000000655	ENSEEEP00000013028	Uncharacterized protein.	Uncharacterized protein.	0.458
ENSEEEP00000000655	LOC113570568	ENSEEEP00000000655	ENSEEEP00000018613	Uncharacterized protein.	Apolipoprotein Bb, tandem duplicate 1.	0.882
ENSEEEP00000000655	LOC113578327	ENSEEEP00000000655	ENSEEEP00000010330	Uncharacterized protein.	Uncharacterized protein.	0.458
ENSEEEP00000000655	LOC113581916	ENSEEEP00000000655	ENSEEEP00000047123	Uncharacterized protein.	Vitellogenin 3, phosvitinless.	0.755
ENSEEEP00000000655	LOC113586100	ENSEEEP00000000655	ENSEEEP00000017777	Uncharacterized protein.	DUF1944 domain-containing protein.	0.755
ENSEEEP00000000655	LOC113586101	ENSEEEP00000000655	ENSEEEP00000012933	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.755
ENSEEEP00000000655	LOC113586104	ENSEEEP00000000655	ENSEEEP00000017469	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.755
ENSEEEP00000000655	apob	ENSEEEP00000000655	ENSEEEP00000033460	Uncharacterized protein.	Apolipoprotein Ba.	0.895
ENSEEEP00000000655	apoe	ENSEEEP00000000655	ENSEEEP00000013154	Uncharacterized protein.	Uncharacterized protein.	0.434
LOC113568397	LOC113568398	ENSEEEP00000013030	ENSEEEP00000013028	Uncharacterized protein.	Uncharacterized protein.	0.755
LOC113568397	LOC113570568	ENSEEEP00000013030	ENSEEEP00000018613	Uncharacterized protein.	Apolipoprotein Bb, tandem duplicate 1.	0.803
LOC113568397	LOC113578327	ENSEEEP00000013030	ENSEEEP00000010330	Uncharacterized protein.	Uncharacterized protein.	0.759
LOC113568397	LOC113581916	ENSEEEP00000013030	ENSEEEP00000047123	Uncharacterized protein.	Vitellogenin 3, phosvitinless.	0.616
LOC113568397	LOC113586100	ENSEEEP00000013030	ENSEEEP00000017777	Uncharacterized protein.	DUF1944 domain-containing protein.	0.616
LOC113568397	LOC113586101	ENSEEEP00000013030	ENSEEEP00000012933	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.616
LOC113568397	LOC113586104	ENSEEEP00000013030	ENSEEEP00000017469	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.616
LOC113568397	LOC113589139	ENSEEEP00000013030	ENSEEEP00000037339	Uncharacterized protein.	Uncharacterized protein.	0.679
LOC113568397	apob	ENSEEEP00000013030	ENSEEEP00000033460	Uncharacterized protein.	Apolipoprotein Ba.	0.814
LOC113568397	apoc1	ENSEEEP00000013030	ENSEEEP00000013031	Uncharacterized protein.	Uncharacterized protein.	0.828
LOC113568397	scarb1	ENSEEEP00000013030	ENSEEEP00000044241	Uncharacterized protein.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.598