(18 nodes) Catalytic activity, acting on a glycoprotein, and Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mgat4d	Zgc:154054. (490 aa)
	mgat4a	Uncharacterized protein. (547 aa)
	fut8	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family. (581 aa)
	mgat3	Uncharacterized protein. (605 aa)
	mgat4c	Mgat4 family member C. (480 aa)
	man1a1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (630 aa)
	man1a2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (645 aa)
	LOC113587801	Zgc:101663. (498 aa)
	LOC113581219	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family. (580 aa)
	mgat2	Uncharacterized protein. (445 aa)
	LOC113572463	Alpha-mannosidase. (1152 aa)
	LOC113590323	Uncharacterized protein. (516 aa)
	LOC113591397	Uncharacterized protein. (506 aa)
	LOC113586397	Uncharacterized protein. (458 aa)
	LOC113571121	Uncharacterized protein. (414 aa)
	man2a2	Alpha-mannosidase. (1165 aa)
	mgat4b	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B. (551 aa)
	mgat5	Uncharacterized protein. (739 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC113571121	LOC113572463	ENSEEEP00000044050	ENSEEEP00000033878	Uncharacterized protein.	Alpha-mannosidase.	0.937
LOC113571121	LOC113581219	ENSEEEP00000044050	ENSEEEP00000024332	Uncharacterized protein.	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	0.927
LOC113571121	LOC113586397	ENSEEEP00000044050	ENSEEEP00000041576	Uncharacterized protein.	Uncharacterized protein.	0.407
LOC113571121	LOC113590323	ENSEEEP00000044050	ENSEEEP00000039307	Uncharacterized protein.	Uncharacterized protein.	0.407
LOC113571121	LOC113591397	ENSEEEP00000044050	ENSEEEP00000040419	Uncharacterized protein.	Uncharacterized protein.	0.917
LOC113571121	fut8	ENSEEEP00000044050	ENSEEEP00000007361	Uncharacterized protein.	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	0.927
LOC113571121	man2a2	ENSEEEP00000044050	ENSEEEP00000045828	Uncharacterized protein.	Alpha-mannosidase.	0.937
LOC113571121	mgat2	ENSEEEP00000044050	ENSEEEP00000025039	Uncharacterized protein.	Uncharacterized protein.	0.903
LOC113571121	mgat3	ENSEEEP00000044050	ENSEEEP00000009407	Uncharacterized protein.	Uncharacterized protein.	0.917
LOC113571121	mgat4a	ENSEEEP00000044050	ENSEEEP00000007099	Uncharacterized protein.	Uncharacterized protein.	0.913
LOC113571121	mgat4b	ENSEEEP00000044050	ENSEEEP00000050675	Uncharacterized protein.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B.	0.913
LOC113571121	mgat4d	ENSEEEP00000044050	ENSEEEP00000001226	Uncharacterized protein.	Zgc:154054.	0.911
LOC113572463	LOC113571121	ENSEEEP00000033878	ENSEEEP00000044050	Alpha-mannosidase.	Uncharacterized protein.	0.937
LOC113572463	LOC113581219	ENSEEEP00000033878	ENSEEEP00000024332	Alpha-mannosidase.	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	0.933
LOC113572463	LOC113586397	ENSEEEP00000033878	ENSEEEP00000041576	Alpha-mannosidase.	Uncharacterized protein.	0.937
LOC113572463	LOC113590323	ENSEEEP00000033878	ENSEEEP00000039307	Alpha-mannosidase.	Uncharacterized protein.	0.950
LOC113572463	fut8	ENSEEEP00000033878	ENSEEEP00000007361	Alpha-mannosidase.	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	0.933
LOC113572463	man2a2	ENSEEEP00000033878	ENSEEEP00000045828	Alpha-mannosidase.	Alpha-mannosidase.	0.936
LOC113572463	mgat2	ENSEEEP00000033878	ENSEEEP00000025039	Alpha-mannosidase.	Uncharacterized protein.	0.937
LOC113581219	LOC113571121	ENSEEEP00000024332	ENSEEEP00000044050	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Uncharacterized protein.	0.927