(63 nodes) Mucin type O-glycan biosynthesis, and Glycosphingolipid biosynthesis - ganglio series network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCNT1	Uncharacterized protein. (411 aa)
	ENSEEEP00000000361	Uncharacterized protein. (519 aa)
	B3galt4	Hexosyltransferase. (363 aa)
	Gcnt3	Glucosaminyl (N-acetyl) transferase 3, mucin type. (413 aa)
	ENSEEEP00000003154	VWFD domain-containing protein. (325 aa)
	ENSEEEP00000003159	Uncharacterized protein. (535 aa)
	ENSEEEP00000003168	Uncharacterized protein. (703 aa)
	ENSEEEP00000003170	VWFD domain-containing protein. (249 aa)
	ENSEEEP00000003939	SRCR domain-containing protein. (190 aa)
	LOC113589355	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (364 aa)
	LOC113586520	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (379 aa)
	ENSEEEP00000006567	Uncharacterized protein. (78 aa)
	galnt2	Polypeptide N-acetylgalactosaminyltransferase. (659 aa)
	ENSEEEP00000007507	Uncharacterized protein. (405 aa)
	ENSEEEP00000007509	VWFD domain-containing protein. (220 aa)
	ENSEEEP00000007512	Mucin 5f. (452 aa)
	ENSEEEP00000007515	Uncharacterized protein. (398 aa)
	ENSEEEP00000007516	VWFD domain-containing protein. (230 aa)
	galnt16	Polypeptide N-acetylgalactosaminyltransferase. (551 aa)
	b4galnt1	Beta-1,4 N-acetylgalactosaminyltransferase. (538 aa)
	LOC113567785	Uncharacterized protein. (396 aa)
	galnt12	Polypeptide N-acetylgalactosaminyltransferase. (589 aa)
	LOC113590032	Polypeptide N-acetylgalactosaminyltransferase. (587 aa)
	LOC113590039	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (291 aa)
	st6galnac6	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (307 aa)
	st8sia1	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1; Belongs to the glycosyltransferase 29 family. (335 aa)
	gcnt7	Uncharacterized protein. (422 aa)
	slc33a1	Uncharacterized protein. (546 aa)
	trim55	Tripartite motif containing 55b. (357 aa)
	heg1	Heart development protein with EGF-like domains 1. (837 aa)
	st6galnac3	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (286 aa)
	st6galnac5	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (325 aa)
	ENSEEEP00000024698	VWFD domain-containing protein. (361 aa)
	galnt13	Polypeptide N-acetylgalactosaminyltransferase. (558 aa)
	ENSEEEP00000025482	Hexosyltransferase. (338 aa)
	ENSEEEP00000027898	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (241 aa)
	ENSEEEP00000028596	Glucosaminyl (N-acetyl) transferase 4, core 2, a. (375 aa)
	GALNT10	Polypeptide N-acetylgalactosaminyltransferase. (605 aa)
	c1galt1c1	Uncharacterized protein. (320 aa)
	st3gal2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2; Belongs to the glycosyltransferase 29 family. (378 aa)
	siae	SASA domain-containing protein. (513 aa)
	ENSEEEP00000035651	Uncharacterized protein. (179 aa)
	ENSEEEP00000035654	Glyco_trans_2-like domain-containing protein. (69 aa)
	galnt7	Polypeptide N-acetylgalactosaminyltransferase. (651 aa)
	LOC113586345	Polypeptide N-acetylgalactosaminyltransferase. (432 aa)
	ENSEEEP00000037312	Glyco_trans_2-like domain-containing protein. (231 aa)
	GALNT3	Polypeptide N-acetylgalactosaminyltransferase. (624 aa)
	LOC113588020	Glucosaminyl (N-acetyl) transferase 4, core 2, b. (431 aa)
	LOC113589179	Uncharacterized protein. (403 aa)
	LOC113589183	Beta-1,4 N-acetylgalactosaminyltransferase. (544 aa)
	LOC113578575	Polypeptide N-acetylgalactosaminyltransferase. (627 aa)
	ENSEEEP00000042194	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (226 aa)
	LOC113579753	AB hydrolase-1 domain-containing protein. (429 aa)
	galnt1	Polypeptide N-acetylgalactosaminyltransferase. (527 aa)
	muc15	Uncharacterized protein. (310 aa)
	ENSEEEP00000044843	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (264 aa)
	LOC113591994	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (340 aa)
	casd1	Cas1_AcylT domain-containing protein. (791 aa)
	GALNT11	Polypeptide N-acetylgalactosaminyltransferase. (596 aa)
	b4galnt4	Beta-1,4-N-acetylgalactosaminyltransferase; Transfers N-acetylgalactosamine (GalNAc) from UDP-GalNAc to N-acetylglucosamine-beta-benzyl with a beta-1,4-linkage to form N,N'- diacetyllactosediamine, GalNAc-beta-1,4-GlcNAc structures in N-linked glycans and probably O-linked glycans. (1127 aa)
	LOC113585372	Polypeptide N-acetylgalactosaminyltransferase. (550 aa)
	LOC113584806	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (391 aa)
	LOC113582980	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (429 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3galt4	LOC113589183	ENSEEEP00000001049	ENSEEEP00000039751	Hexosyltransferase.	Beta-1,4 N-acetylgalactosaminyltransferase.	0.905
B3galt4	LOC113589355	ENSEEEP00000001049	ENSEEEP00000004464	Hexosyltransferase.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.920
B3galt4	LOC113591994	ENSEEEP00000001049	ENSEEEP00000044852	Hexosyltransferase.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.920
B3galt4	b4galnt1	ENSEEEP00000001049	ENSEEEP00000009322	Hexosyltransferase.	Beta-1,4 N-acetylgalactosaminyltransferase.	0.905
B3galt4	st3gal2	ENSEEEP00000001049	ENSEEEP00000030643	Hexosyltransferase.	ST3 beta-galactoside alpha-2,3-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.947
ENSEEEP00000000361	st6galnac6	ENSEEEP00000000361	ENSEEEP00000012820	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.579
ENSEEEP00000003154	ENSEEEP00000003159	ENSEEEP00000003154	ENSEEEP00000003159	VWFD domain-containing protein.	Uncharacterized protein.	0.610
ENSEEEP00000003154	ENSEEEP00000003168	ENSEEEP00000003154	ENSEEEP00000003168	VWFD domain-containing protein.	Uncharacterized protein.	0.719
ENSEEEP00000003154	ENSEEEP00000007509	ENSEEEP00000003154	ENSEEEP00000007509	VWFD domain-containing protein.	VWFD domain-containing protein.	0.643
ENSEEEP00000003154	ENSEEEP00000007512	ENSEEEP00000003154	ENSEEEP00000007512	VWFD domain-containing protein.	Mucin 5f.	0.630
ENSEEEP00000003154	ENSEEEP00000007516	ENSEEEP00000003154	ENSEEEP00000007516	VWFD domain-containing protein.	VWFD domain-containing protein.	0.650
ENSEEEP00000003159	ENSEEEP00000003154	ENSEEEP00000003159	ENSEEEP00000003154	Uncharacterized protein.	VWFD domain-containing protein.	0.610
ENSEEEP00000003159	ENSEEEP00000003170	ENSEEEP00000003159	ENSEEEP00000003170	Uncharacterized protein.	VWFD domain-containing protein.	0.795
ENSEEEP00000003159	ENSEEEP00000007507	ENSEEEP00000003159	ENSEEEP00000007507	Uncharacterized protein.	Uncharacterized protein.	0.775
ENSEEEP00000003159	ENSEEEP00000007509	ENSEEEP00000003159	ENSEEEP00000007509	Uncharacterized protein.	VWFD domain-containing protein.	0.798
ENSEEEP00000003159	ENSEEEP00000007515	ENSEEEP00000003159	ENSEEEP00000007515	Uncharacterized protein.	Uncharacterized protein.	0.803
ENSEEEP00000003159	ENSEEEP00000007516	ENSEEEP00000003159	ENSEEEP00000007516	Uncharacterized protein.	VWFD domain-containing protein.	0.797
ENSEEEP00000003159	ENSEEEP00000024698	ENSEEEP00000003159	ENSEEEP00000024698	Uncharacterized protein.	VWFD domain-containing protein.	0.460
ENSEEEP00000003159	ENSEEEP00000028596	ENSEEEP00000003159	ENSEEEP00000028596	Uncharacterized protein.	Glucosaminyl (N-acetyl) transferase 4, core 2, a.	0.449
ENSEEEP00000003159	GALNT11	ENSEEEP00000003159	ENSEEEP00000047873	Uncharacterized protein.	Polypeptide N-acetylgalactosaminyltransferase.	0.403