(5 nodes) Mixed, incl. HNH nucleases, and SCF complex assembly network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSEEEP00000029683	Lysine (K)-specific demethylase 2Bb. (673 aa)
	cacul1	Cullin domain-containing protein; Belongs to the cullin family. (330 aa)
	cand1	TIP120 domain-containing protein. (1274 aa)
	fbxo9	F-box domain-containing protein. (424 aa)
	skp1	Uncharacterized protein; Belongs to the SKP1 family. (163 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000029683	cacul1	ENSEEEP00000029683	ENSEEEP00000035298	Lysine (K)-specific demethylase 2Bb.	Cullin domain-containing protein; Belongs to the cullin family.	0.821
ENSEEEP00000029683	cand1	ENSEEEP00000029683	ENSEEEP00000037534	Lysine (K)-specific demethylase 2Bb.	TIP120 domain-containing protein.	0.660
ENSEEEP00000029683	fbxo9	ENSEEEP00000029683	ENSEEEP00000045290	Lysine (K)-specific demethylase 2Bb.	F-box domain-containing protein.	0.659
ENSEEEP00000029683	skp1	ENSEEEP00000029683	ENSEEEP00000047043	Lysine (K)-specific demethylase 2Bb.	Uncharacterized protein; Belongs to the SKP1 family.	0.999
cacul1	ENSEEEP00000029683	ENSEEEP00000035298	ENSEEEP00000029683	Cullin domain-containing protein; Belongs to the cullin family.	Lysine (K)-specific demethylase 2Bb.	0.821
cacul1	cand1	ENSEEEP00000035298	ENSEEEP00000037534	Cullin domain-containing protein; Belongs to the cullin family.	TIP120 domain-containing protein.	0.794
cacul1	fbxo9	ENSEEEP00000035298	ENSEEEP00000045290	Cullin domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.782
cacul1	skp1	ENSEEEP00000035298	ENSEEEP00000047043	Cullin domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the SKP1 family.	0.875
cand1	ENSEEEP00000029683	ENSEEEP00000037534	ENSEEEP00000029683	TIP120 domain-containing protein.	Lysine (K)-specific demethylase 2Bb.	0.660
cand1	cacul1	ENSEEEP00000037534	ENSEEEP00000035298	TIP120 domain-containing protein.	Cullin domain-containing protein; Belongs to the cullin family.	0.794
cand1	fbxo9	ENSEEEP00000037534	ENSEEEP00000045290	TIP120 domain-containing protein.	F-box domain-containing protein.	0.601
cand1	skp1	ENSEEEP00000037534	ENSEEEP00000047043	TIP120 domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.811
fbxo9	ENSEEEP00000029683	ENSEEEP00000045290	ENSEEEP00000029683	F-box domain-containing protein.	Lysine (K)-specific demethylase 2Bb.	0.659
fbxo9	cacul1	ENSEEEP00000045290	ENSEEEP00000035298	F-box domain-containing protein.	Cullin domain-containing protein; Belongs to the cullin family.	0.782
fbxo9	cand1	ENSEEEP00000045290	ENSEEEP00000037534	F-box domain-containing protein.	TIP120 domain-containing protein.	0.601
fbxo9	skp1	ENSEEEP00000045290	ENSEEEP00000047043	F-box domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.980
skp1	ENSEEEP00000029683	ENSEEEP00000047043	ENSEEEP00000029683	Uncharacterized protein; Belongs to the SKP1 family.	Lysine (K)-specific demethylase 2Bb.	0.999
skp1	cacul1	ENSEEEP00000047043	ENSEEEP00000035298	Uncharacterized protein; Belongs to the SKP1 family.	Cullin domain-containing protein; Belongs to the cullin family.	0.875
skp1	cand1	ENSEEEP00000047043	ENSEEEP00000037534	Uncharacterized protein; Belongs to the SKP1 family.	TIP120 domain-containing protein.	0.811
skp1	fbxo9	ENSEEEP00000047043	ENSEEEP00000045290	Uncharacterized protein; Belongs to the SKP1 family.	F-box domain-containing protein.	0.980