(8 nodes) TACC family, and XMAP215 family network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113590137	TACC_C domain-containing protein. (907 aa)
	LOC113568418	Uncharacterized protein. (670 aa)
	LOC113568634	Uncharacterized protein. (1190 aa)
	Tacc1	Uncharacterized protein. (350 aa)
	tacc1	Transforming, acidic coiled-coil containing protein 1. (269 aa)
	ckap5	Cytoskeleton associated protein 5. (2014 aa)
	ENSEEEP00000043724	SLAIN motif family, member 2. (490 aa)
	LOC113589770	TACC_C domain-containing protein. (1928 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000043724	LOC113568418	ENSEEEP00000043724	ENSEEEP00000014347	SLAIN motif family, member 2.	Uncharacterized protein.	0.684
ENSEEEP00000043724	LOC113568634	ENSEEEP00000043724	ENSEEEP00000019638	SLAIN motif family, member 2.	Uncharacterized protein.	0.684
ENSEEEP00000043724	ckap5	ENSEEEP00000043724	ENSEEEP00000034691	SLAIN motif family, member 2.	Cytoskeleton associated protein 5.	0.684
LOC113568418	ENSEEEP00000043724	ENSEEEP00000014347	ENSEEEP00000043724	Uncharacterized protein.	SLAIN motif family, member 2.	0.684
LOC113568418	LOC113568634	ENSEEEP00000014347	ENSEEEP00000019638	Uncharacterized protein.	Uncharacterized protein.	0.926
LOC113568418	LOC113589770	ENSEEEP00000014347	ENSEEEP00000047541	Uncharacterized protein.	TACC_C domain-containing protein.	0.701
LOC113568418	LOC113590137	ENSEEEP00000014347	ENSEEEP00000009527	Uncharacterized protein.	TACC_C domain-containing protein.	0.730
LOC113568418	Tacc1	ENSEEEP00000014347	ENSEEEP00000028069	Uncharacterized protein.	Uncharacterized protein.	0.548
LOC113568418	tacc1	ENSEEEP00000014347	ENSEEEP00000028072	Uncharacterized protein.	Transforming, acidic coiled-coil containing protein 1.	0.684
LOC113568634	ENSEEEP00000043724	ENSEEEP00000019638	ENSEEEP00000043724	Uncharacterized protein.	SLAIN motif family, member 2.	0.684
LOC113568634	LOC113568418	ENSEEEP00000019638	ENSEEEP00000014347	Uncharacterized protein.	Uncharacterized protein.	0.926
LOC113568634	LOC113589770	ENSEEEP00000019638	ENSEEEP00000047541	Uncharacterized protein.	TACC_C domain-containing protein.	0.701
LOC113568634	LOC113590137	ENSEEEP00000019638	ENSEEEP00000009527	Uncharacterized protein.	TACC_C domain-containing protein.	0.730
LOC113568634	Tacc1	ENSEEEP00000019638	ENSEEEP00000028069	Uncharacterized protein.	Uncharacterized protein.	0.548
LOC113568634	tacc1	ENSEEEP00000019638	ENSEEEP00000028072	Uncharacterized protein.	Transforming, acidic coiled-coil containing protein 1.	0.684
LOC113589770	LOC113568418	ENSEEEP00000047541	ENSEEEP00000014347	TACC_C domain-containing protein.	Uncharacterized protein.	0.701
LOC113589770	LOC113568634	ENSEEEP00000047541	ENSEEEP00000019638	TACC_C domain-containing protein.	Uncharacterized protein.	0.701
LOC113589770	ckap5	ENSEEEP00000047541	ENSEEEP00000034691	TACC_C domain-containing protein.	Cytoskeleton associated protein 5.	0.701
LOC113590137	LOC113568418	ENSEEEP00000009527	ENSEEEP00000014347	TACC_C domain-containing protein.	Uncharacterized protein.	0.730
LOC113590137	LOC113568634	ENSEEEP00000009527	ENSEEEP00000019638	TACC_C domain-containing protein.	Uncharacterized protein.	0.730