50 items (Electrophorus electricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113588753	Kinesin-associated protein 3b. (785 aa)
	syce3	Uncharacterized protein. (96 aa)
	LOC113569058	AAA_23 domain-containing protein. (469 aa)
	LOC113569080	Peptidylprolyl isomerase. (329 aa)
	LOC113569079	Inactive peptidyl-prolyl cis-trans isomerase FKBP6-like. (329 aa)
	ENSEEEP00000007003	AAA_23 domain-containing protein. (53 aa)
	chek1	Checkpoint kinase 1; Belongs to the protein kinase superfamily. (470 aa)
	cdca7	zf-4CXXC_R1 domain-containing protein. (406 aa)
	LOC113581033	Uncharacterized protein. (802 aa)
	psmc3ip	Uncharacterized protein. (237 aa)
	cdca7l	Cell division cycle associated 7b. (425 aa)
	msh4	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (894 aa)
	rcc1	Uncharacterized protein. (425 aa)
	rad50	RAD50 homolog, double strand break repair protein. (1181 aa)
	topbp1	DNA topoisomerase II binding protein 1. (1479 aa)
	LRPPRC	PPR_long domain-containing protein. (1439 aa)
	mlh1	DNA_mis_repair domain-containing protein. (724 aa)
	Syce1	Si:ch211-199g17.9. (132 aa)
	nek2	Protein kinase domain-containing protein. (465 aa)
	rad51	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
	smc2	Structural maintenance of chromosomes protein. (1219 aa)
	LOC113582267	Breast cancer 2, early onset. (2391 aa)
	smc3	Structural maintenance of chromosomes protein. (1217 aa)
	wapl	WAPL domain-containing protein. (1163 aa)
	dmc1	DNA meiotic recombinase 1. (324 aa)
	ENSEEEP00000023093	Zebrafish testis-expressed 38. (270 aa)
	ENSEEEP00000023290	RAD9 checkpoint clamp component B. (181 aa)
	RSPH1	Radial spoke head component 1. (256 aa)
	ENSEEEP00000025109	Meiosis-specific, MEI4 homolog (S. cerevisiae). (303 aa)
	smc4	Structural maintenance of chromosomes protein. (1296 aa)
	smc1a	Structural maintenance of chromosomes protein. (1232 aa)
	ncapg	Non-SMC condensin I complex, subunit G. (984 aa)
	ENSEEEP00000029998	Uncharacterized protein. (608 aa)
	nol6	Nucleolar protein 6. (1143 aa)
	ncaph	Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. (695 aa)
	rad9a	Cell cycle checkpoint control protein; Belongs to the rad9 family. (386 aa)
	LOC113586953	Cor1 domain-containing protein. (223 aa)
	rec8	REC8 meiotic recombination protein b. (439 aa)
	ENSEEEP00000034632	Uncharacterized protein. (102 aa)
	blm	BLM RecQ like helicase. (1281 aa)
	LOC113575180	Synaptonemal complex central element protein 2. (155 aa)
	mlh3	Uncharacterized protein. (1098 aa)
	Ccnb1ip1	Cyclin B1 interacting protein 1. (111 aa)
	hus1	Checkpoint protein; Belongs to the HUS1 family. (283 aa)
	LOC113589241	Structural maintenance of chromosomes protein. (1234 aa)
	LOC113582707	WAPL cohesin release factor b. (1021 aa)
	sycp3	Synaptonemal complex protein 3. (235 aa)
	LOC113576847	RING-type domain-containing protein. (995 aa)
	ENSEEEP00000047995	Uncharacterized protein. (184 aa)
	rad1	Uncharacterized protein. (279 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccnb1ip1	msh4	ENSEEEP00000042089	ENSEEEP00000012710	Cyclin B1 interacting protein 1.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.403
ENSEEEP00000007003	ENSEEEP00000023290	ENSEEEP00000007003	ENSEEEP00000023290	AAA_23 domain-containing protein.	RAD9 checkpoint clamp component B.	0.440
ENSEEEP00000007003	LOC113576847	ENSEEEP00000007003	ENSEEEP00000047536	AAA_23 domain-containing protein.	RING-type domain-containing protein.	0.821
ENSEEEP00000007003	LOC113582267	ENSEEEP00000007003	ENSEEEP00000018632	AAA_23 domain-containing protein.	Breast cancer 2, early onset.	0.536
ENSEEEP00000007003	blm	ENSEEEP00000007003	ENSEEEP00000035037	AAA_23 domain-containing protein.	BLM RecQ like helicase.	0.795
ENSEEEP00000007003	cdca7	ENSEEEP00000007003	ENSEEEP00000009656	AAA_23 domain-containing protein.	zf-4CXXC_R1 domain-containing protein.	0.416
ENSEEEP00000007003	cdca7l	ENSEEEP00000007003	ENSEEEP00000011000	AAA_23 domain-containing protein.	Cell division cycle associated 7b.	0.416
ENSEEEP00000007003	chek1	ENSEEEP00000007003	ENSEEEP00000008052	AAA_23 domain-containing protein.	Checkpoint kinase 1; Belongs to the protein kinase superfamily.	0.440
ENSEEEP00000007003	dmc1	ENSEEEP00000007003	ENSEEEP00000021955	AAA_23 domain-containing protein.	DNA meiotic recombinase 1.	0.645
ENSEEEP00000007003	hus1	ENSEEEP00000007003	ENSEEEP00000043450	AAA_23 domain-containing protein.	Checkpoint protein; Belongs to the HUS1 family.	0.504
ENSEEEP00000007003	rad51	ENSEEEP00000007003	ENSEEEP00000017370	AAA_23 domain-containing protein.	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.825
ENSEEEP00000007003	rad9a	ENSEEEP00000007003	ENSEEEP00000031965	AAA_23 domain-containing protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.440
ENSEEEP00000007003	smc3	ENSEEEP00000007003	ENSEEEP00000020739	AAA_23 domain-containing protein.	Structural maintenance of chromosomes protein.	0.484
ENSEEEP00000007003	topbp1	ENSEEEP00000007003	ENSEEEP00000014851	AAA_23 domain-containing protein.	DNA topoisomerase II binding protein 1.	0.604
ENSEEEP00000023093	ENSEEEP00000029998	ENSEEEP00000023093	ENSEEEP00000029998	Zebrafish testis-expressed 38.	Uncharacterized protein.	0.545
ENSEEEP00000023093	LOC113575180	ENSEEEP00000023093	ENSEEEP00000039418	Zebrafish testis-expressed 38.	Synaptonemal complex central element protein 2.	0.445
ENSEEEP00000023093	Syce1	ENSEEEP00000023093	ENSEEEP00000016376	Zebrafish testis-expressed 38.	Si:ch211-199g17.9.	0.548
ENSEEEP00000023093	dmc1	ENSEEEP00000023093	ENSEEEP00000021955	Zebrafish testis-expressed 38.	DNA meiotic recombinase 1.	0.669
ENSEEEP00000023093	hus1	ENSEEEP00000023093	ENSEEEP00000043450	Zebrafish testis-expressed 38.	Checkpoint protein; Belongs to the HUS1 family.	0.438
ENSEEEP00000023093	mlh1	ENSEEEP00000023093	ENSEEEP00000016195	Zebrafish testis-expressed 38.	DNA_mis_repair domain-containing protein.	0.420