STRINGSTRING
LOC113569503 LOC113569503 rmi2 rmi2 LOC113589927 LOC113589927 LOC113585995 LOC113585995 nsmce1 nsmce1 rpa1 rpa1 samhd1 samhd1 smchd1 smchd1 exd2 exd2 LOC113584344 LOC113584344 actr8 actr8 LOC113575351 LOC113575351 ercc6 ercc6 rmi1 rmi1 LOC113568250 LOC113568250 sirt6 sirt6 ENSEEEP00000004636 ENSEEEP00000004636 ENSEEEP00000004640 ENSEEEP00000004640 LOC113584930 LOC113584930 ENSEEEP00000005036 ENSEEEP00000005036 LOC113569058 LOC113569058 LOC113578819 LOC113578819 cdca5 cdca5 ENSEEEP00000006834 ENSEEEP00000006834 ENSEEEP00000007003 ENSEEEP00000007003 hmces hmces polq polq dclre1c dclre1c lig3 lig3 rad51d rad51d DNA2 DNA2 dtx3 dtx3 nbn nbn top3a top3a mcm3 mcm3 recql4 recql4 MARF1 MARF1 tdp1 tdp1 poln poln babam2 babam2 dclre1a dclre1a dntt dntt zswim7 zswim7 rad50 rad50 spo11 spo11 mcm9 mcm9 LOC113572579 LOC113572579 mlh1 mlh1 mcm5 mcm5 xrcc3 xrcc3 ENSEEEP00000016610 ENSEEEP00000016610 dclre1b dclre1b pola1 pola1 ENSEEEP00000016716 ENSEEEP00000016716 LOC113591245 LOC113591245 ENSEEEP00000017093 ENSEEEP00000017093 rad51 rad51 Rev3l Rev3l ENSEEEP00000018543 ENSEEEP00000018543 LOC113582267 LOC113582267 LOC113578445 LOC113578445 paxx paxx ENSEEEP00000019307 ENSEEEP00000019307 nipbl nipbl mcm8 mcm8 LOC113578936 LOC113578936 mms22l mms22l MCMDC2 MCMDC2 ercc4 ercc4 trip13 trip13 cdc45 cdc45 dmc1 dmc1 swi5 swi5 spidr spidr mcm4 mcm4 cdc7 cdc7 xrcc6 xrcc6 smc5 smc5 ercc8 ercc8 rpa3 rpa3 hsf2bp hsf2bp lig4 lig4 mre11 mre11 gins4 gins4 fancb fancb parp2 parp2 ino80 ino80 poll poll LOC113572403 LOC113572403 rnf8 rnf8 uvrag uvrag LOC113589524 LOC113589524 recql recql actr5 actr5 parp1 parp1 xrcc1 xrcc1 babam1 babam1 psmd14 psmd14 helq helq abraxas1 abraxas1 polb polb ENSEEEP00000032310 ENSEEEP00000032310 Meioc Meioc Aunip Aunip rec8 rec8 nsmce2 nsmce2 LOC113591806 LOC113591806 rad51ap1 rad51ap1 rbbp8 rbbp8 blm blm ENSEEEP00000035317 ENSEEEP00000035317 msh2 msh2 ankle1 ankle1 gins2 gins2 LOC113575160 LOC113575160 Recql5 Recql5 ENSEEEP00000037634 ENSEEEP00000037634 ENSEEEP00000037636 ENSEEEP00000037636 LOC113567584 LOC113567584 LOC113584242 LOC113584242 fbh1 fbh1 LOC113575219 LOC113575219 LOC113577337 LOC113577337 XRCC2 XRCC2 ppp4c ppp4c ercc1 ercc1 mcm7 mcm7 mus81 mus81 hus1 hus1 brcc3 brcc3 ddx1 ddx1 ENSEEEP00000043756 ENSEEEP00000043756 uimc1 uimc1 xrcc5 xrcc5 tonsl tonsl LOC113591992 LOC113591992 iffo1 iffo1 LOC113592019 LOC113592019 xrcc4 xrcc4 polm polm rad52 rad52 sem1 sem1 vcp vcp mfsd11 mfsd11 LOC113576847 LOC113576847 chek2 chek2 mcm6 mcm6 fan1 fan1 zfyve26 zfyve26 LOC113572244 LOC113572244 LOC113581998 LOC113581998 Rnf169 Rnf169 LOC113588689 LOC113588689 mcm2 mcm2 pnkp pnkp rnf168 rnf168 LOC113573002 LOC113573002 prpf19 prpf19 ENSEEEP00000050839 ENSEEEP00000050839 ENSEEEP00000051054 ENSEEEP00000051054 eme1 eme1 fancd2 fancd2 parp3 parp3 prkdc prkdc ap5z1 ap5z1 ap5s1 ap5s1 LOC113589545 LOC113589545 LOC113575331 LOC113575331
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC113569503Uncharacterized protein. (225 aa)
rmi2Uncharacterized protein. (147 aa)
LOC113589927Uncharacterized protein. (414 aa)
LOC113585995DNA helicase; Belongs to the MCM family. (801 aa)
nsmce1zf-RING-like domain-containing protein. (274 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (624 aa)
samhd1Uncharacterized protein. (623 aa)
smchd1Structural maintenance of chromosomes flexible hinge domain containing 1. (1984 aa)
exd2Exonuclease 3'-5' domain containing 2. (616 aa)
LOC113584344DNA helicase; Belongs to the MCM family. (820 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (636 aa)
LOC113575351Uncharacterized protein. (215 aa)
ercc6Excision repair cross-complementation group 6. (1398 aa)
rmi1DUF1767 domain-containing protein. (587 aa)
LOC113568250RAD51 paralog C. (260 aa)
sirt6Deacetylase sirtuin-type domain-containing protein. (396 aa)
ENSEEEP00000004636Rad21_Rec8 domain-containing protein. (66 aa)
ENSEEEP00000004640Rad21_Rec8_N domain-containing protein. (138 aa)
LOC113584930DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (141 aa)
ENSEEEP00000005036Uncharacterized protein. (813 aa)
LOC113569058AAA_23 domain-containing protein. (469 aa)
LOC113578819Uncharacterized protein. (638 aa)
cdca5Uncharacterized protein. (260 aa)
ENSEEEP00000006834Uncharacterized protein. (110 aa)
ENSEEEP00000007003AAA_23 domain-containing protein. (53 aa)
hmcesAbasic site processing protein HMCES; Sensor of abasic sites in single-stranded DNA (ssDNA) required to preserve genome integrity by promoting error-free repair of abasic sites. Acts as an enzyme that recognizes and binds abasic sites in ssDNA at replication forks and chemically modifies the lesion by forming a covalent cross-link with DNA. The HMCES DNA-protein cross- link is then degraded by the proteasome. Promotes error-free repair of abasic sites by acting as a 'suicide' enzyme that is degraded, thereby protecting abasic sites from translesion synthesis (TLS) polymerases and endon [...] (362 aa)
polqPolymerase (DNA directed), theta. (2580 aa)
dclre1cDNA cross-link repair 1C, PSO2 homolog (S. cerevisiae). (683 aa)
lig3DNA ligase. (1009 aa)
rad51dRECA_2 domain-containing protein. (338 aa)
DNA2DNA replication helicase/nuclease 2. (1002 aa)
dtx3RING-type domain-containing protein. (367 aa)
nbnNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (816 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1009 aa)
mcm3DNA helicase; Belongs to the MCM family. (815 aa)
recql4RecQ helicase-like 4. (817 aa)
MARF1Meiosis regulator and mRNA stability factor 1. (1669 aa)
tdp1Uncharacterized protein. (622 aa)
polnPolymerase (DNA directed) nu. (844 aa)
babam2Uncharacterized protein. (442 aa)
dclre1aDNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (951 aa)
dnttDNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (499 aa)
zswim7SWIM-type domain-containing protein. (145 aa)
rad50RAD50 homolog, double strand break repair protein. (1181 aa)
spo11SPO11 meiotic protein covalently bound to DSB. (368 aa)
mcm9MCM domain-containing protein; Belongs to the MCM family. (1143 aa)
LOC113572579Intermediate filament family orphan 1a; Belongs to the intermediate filament family. (613 aa)
mlh1DNA_mis_repair domain-containing protein. (724 aa)
mcm5DNA helicase; Belongs to the MCM family. (738 aa)
xrcc3RECA_2 domain-containing protein. (355 aa)
ENSEEEP00000016610Histone PARylation factor 1. (176 aa)
dclre1bDNA cross-link repair 1B. (580 aa)
pola1DNA polymerase. (1321 aa)
ENSEEEP00000016716Helicase ATP-binding domain-containing protein. (320 aa)
LOC113591245Uncharacterized protein. (743 aa)
ENSEEEP00000017093Intermediate filament family orphan 2a; Belongs to the intermediate filament family. (459 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
Rev3lDNA_pol_B domain-containing protein. (304 aa)
ENSEEEP00000018543Methionine sulfoxide reductase B1b. (259 aa)
LOC113582267Breast cancer 2, early onset. (2391 aa)
LOC113578445RAD21 cohesin complex component b. (620 aa)
paxxUncharacterized protein. (192 aa)
ENSEEEP00000019307Uncharacterized protein. (258 aa)
nipblNipped-B protein. (2652 aa)
mcm8MCM domain-containing protein; Belongs to the MCM family. (844 aa)
LOC113578936Uncharacterized protein. (296 aa)
mms22lUncharacterized protein. (1240 aa)
MCMDC2Minichromosome maintenance domain containing 2. (372 aa)
ercc4ERCC4 domain-containing protein. (899 aa)
trip13Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family. (423 aa)
cdc45Uncharacterized protein. (574 aa)
dmc1DNA meiotic recombinase 1. (324 aa)
swi5SWI5 homologous recombination repair protein. (140 aa)
spidrDUF4503 domain-containing protein. (573 aa)
mcm4DNA helicase; Belongs to the MCM family. (848 aa)
cdc7Protein kinase domain-containing protein. (555 aa)
xrcc6Uncharacterized protein. (627 aa)
smc5Structural maintenance of chromosomes 5. (1083 aa)
ercc8WD_REPEATS_REGION domain-containing protein. (400 aa)
rpa3Uncharacterized protein. (122 aa)
hsf2bpHeat shock transcription factor 2 binding protein. (329 aa)
lig4DNA ligase. (909 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (667 aa)
gins4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (224 aa)
fancbUncharacterized protein. (822 aa)
parp2Poly [ADP-ribose] polymerase. (572 aa)
ino80Uncharacterized protein. (1128 aa)
pollPolymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family. (585 aa)
LOC113572403Intermediate filament family orphan 2b; Belongs to the intermediate filament family. (476 aa)
rnf8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (484 aa)
uvragUV radiation resistance associated gene. (685 aa)
LOC113589524RECA_2 domain-containing protein. (121 aa)
recqlATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (826 aa)
actr5Uncharacterized protein; Belongs to the actin family. (646 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1012 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (539 aa)
babam1Uncharacterized protein. (359 aa)
psmd14MPN domain-containing protein. (330 aa)
helqUncharacterized protein. (1026 aa)
abraxas1MPN domain-containing protein. (419 aa)
polbDNA_pol_B_thumb domain-containing protein. (54 aa)
ENSEEEP00000032310ATM serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (3024 aa)
MeiocUncharacterized protein. (221 aa)
AunipUncharacterized protein. (237 aa)
rec8REC8 meiotic recombination protein b. (439 aa)
nsmce2NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase. (257 aa)
LOC113591806Nipped-B protein. (2259 aa)
rad51ap1RAD51_interact domain-containing protein. (230 aa)
rbbp8SAE2 domain-containing protein. (131 aa)
blmBLM RecQ like helicase. (1281 aa)
ENSEEEP00000035317Zgc:165656. (272 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (939 aa)
ankle1Zgc:85936. (862 aa)
gins2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (182 aa)
LOC113575160Uncharacterized protein. (757 aa)
Recql5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (970 aa)
ENSEEEP00000037634ERCC4 domain-containing protein. (1166 aa)
ENSEEEP00000037636Helicase C-terminal domain-containing protein. (432 aa)
LOC113567584Uncharacterized protein. (377 aa)
LOC113584242WD_REPEATS_REGION domain-containing protein. (719 aa)
fbh1F-box domain-containing protein. (1043 aa)
LOC113575219Uncharacterized protein. (287 aa)
LOC113577337Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (263 aa)
XRCC2RECA_2 domain-containing protein. (302 aa)
ppp4cSerine/threonine-protein phosphatase. (307 aa)
ercc1Uncharacterized protein. (346 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (732 aa)
mus81MUS81 structure-specific endonuclease subunit. (615 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (283 aa)
brcc3BRCA1/BRCA2-containing complex, subunit 3. (269 aa)
ddx1Uncharacterized protein. (740 aa)
ENSEEEP00000043756XPGI domain-containing protein. (341 aa)
uimc1RAP80_UIM domain-containing protein. (953 aa)
xrcc5Ku domain-containing protein. (740 aa)
tonslTonsoku-like, DNA repair protein. (1431 aa)
LOC113591992Histone PARylation factor 1. (243 aa)
iffo1IF rod domain-containing protein; Belongs to the intermediate filament family. (633 aa)
LOC113592019Zgc:136908; Belongs to the AAA ATPase family. (806 aa)
xrcc4Uncharacterized protein. (343 aa)
polmDNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family. (503 aa)
rad52RAD52 homolog, DNA repair protein. (287 aa)
sem1Uncharacterized protein. (70 aa)
vcpUncharacterized protein; Belongs to the AAA ATPase family. (806 aa)
mfsd11Major facilitator superfamily domain containing 11. (455 aa)
LOC113576847RING-type domain-containing protein. (995 aa)
chek2Uncharacterized protein. (526 aa)
mcm6DNA helicase; Belongs to the MCM family. (830 aa)
fan1Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (1005 aa)
zfyve26Zinc finger, FYVE domain containing 26. (2547 aa)
LOC113572244Endo/exonuclease/phosphatase domain-containing protein. (409 aa)
LOC113581998RING-type domain-containing protein. (726 aa)
Rnf169RING-type domain-containing protein. (106 aa)
LOC113588689Nucleic acid binding protein 2. (156 aa)
mcm2DNA helicase; Belongs to the MCM family. (908 aa)
pnkpFHA_2 domain-containing protein. (595 aa)
rnf168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recrui [...] (471 aa)
LOC113573002WD_REPEATS_REGION domain-containing protein. (682 aa)
prpf19Pre-mRNA processing factor 19. (499 aa)
ENSEEEP00000050839Metallophos domain-containing protein. (106 aa)
ENSEEEP00000051054Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (307 aa)
eme1Essential meiotic structure-specific endonuclease 1. (550 aa)
fancd2FA complementation group D2. (1261 aa)
parp3Poly [ADP-ribose] polymerase. (527 aa)
prkdcProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4099 aa)
ap5z1Adaptor related protein complex 5 subunit zeta 1. (668 aa)
ap5s1Uncharacterized protein. (200 aa)
LOC113589545RING-type domain-containing protein. (436 aa)
LOC113575331Nucleic acid binding protein 1b. (203 aa)
Your Current Organism:
Electrophorus electricus
NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish
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