(4 nodes) Zeta DNA polymerase complex network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rev3l	DNA_pol_B domain-containing protein. (304 aa)
	pold2	Uncharacterized protein. (469 aa)
	mad2l2	HORMA domain-containing protein. (215 aa)
	pold3	Uncharacterized protein. (462 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rev3l	mad2l2	ENSEEEP00000018397	ENSEEEP00000001265	DNA_pol_B domain-containing protein.	HORMA domain-containing protein.	0.999
Rev3l	pold2	ENSEEEP00000018397	ENSEEEP00000040348	DNA_pol_B domain-containing protein.	Uncharacterized protein.	0.986
Rev3l	pold3	ENSEEEP00000018397	ENSEEEP00000005809	DNA_pol_B domain-containing protein.	Uncharacterized protein.	0.979
mad2l2	Rev3l	ENSEEEP00000001265	ENSEEEP00000018397	HORMA domain-containing protein.	DNA_pol_B domain-containing protein.	0.999
mad2l2	pold2	ENSEEEP00000001265	ENSEEEP00000040348	HORMA domain-containing protein.	Uncharacterized protein.	0.955
mad2l2	pold3	ENSEEEP00000001265	ENSEEEP00000005809	HORMA domain-containing protein.	Uncharacterized protein.	0.955
pold2	Rev3l	ENSEEEP00000040348	ENSEEEP00000018397	Uncharacterized protein.	DNA_pol_B domain-containing protein.	0.986
pold2	mad2l2	ENSEEEP00000040348	ENSEEEP00000001265	Uncharacterized protein.	HORMA domain-containing protein.	0.955
pold2	pold3	ENSEEEP00000040348	ENSEEEP00000005809	Uncharacterized protein.	Uncharacterized protein.	0.998
pold3	Rev3l	ENSEEEP00000005809	ENSEEEP00000018397	Uncharacterized protein.	DNA_pol_B domain-containing protein.	0.979
pold3	mad2l2	ENSEEEP00000005809	ENSEEEP00000001265	Uncharacterized protein.	HORMA domain-containing protein.	0.955
pold3	pold2	ENSEEEP00000005809	ENSEEEP00000040348	Uncharacterized protein.	Uncharacterized protein.	0.998