(11 nodes) Glycoside catabolic process network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fuca2	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. (459 aa)
	LOC113569588	Uncharacterized protein. (158 aa)
	gusb	Glucuronidase, beta. (643 aa)
	LOC113580477	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family. (482 aa)
	gba2	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide. (882 aa)
	naga	Alpha-galactosidase. (438 aa)
	LOC113587534	AB hydrolase-1 domain-containing protein. (285 aa)
	LOC113575058	Uncharacterized protein. (385 aa)
	LOC113575085	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. (452 aa)
	LOC113573885	Hydrolase_4 domain-containing protein. (289 aa)
	ENSEEEP00000021491	Alpha-galactosidase. (267 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000021491	LOC113575058	ENSEEEP00000021491	ENSEEEP00000031470	Alpha-galactosidase.	Uncharacterized protein.	0.424
ENSEEEP00000021491	LOC113575085	ENSEEEP00000021491	ENSEEEP00000031456	Alpha-galactosidase.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.422
ENSEEEP00000021491	LOC113580477	ENSEEEP00000021491	ENSEEEP00000007430	Alpha-galactosidase.	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family.	0.442
ENSEEEP00000021491	fuca2	ENSEEEP00000021491	ENSEEEP00000021242	Alpha-galactosidase.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.426
ENSEEEP00000021491	gusb	ENSEEEP00000021491	ENSEEEP00000003751	Alpha-galactosidase.	Glucuronidase, beta.	0.495
LOC113569588	naga	ENSEEEP00000001147	ENSEEEP00000051335	Uncharacterized protein.	Alpha-galactosidase.	0.456
LOC113575058	ENSEEEP00000021491	ENSEEEP00000031470	ENSEEEP00000021491	Uncharacterized protein.	Alpha-galactosidase.	0.424
LOC113575058	LOC113575085	ENSEEEP00000031470	ENSEEEP00000031456	Uncharacterized protein.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.900
LOC113575058	fuca2	ENSEEEP00000031470	ENSEEEP00000021242	Uncharacterized protein.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.908
LOC113575058	naga	ENSEEEP00000031470	ENSEEEP00000051335	Uncharacterized protein.	Alpha-galactosidase.	0.460
LOC113575085	ENSEEEP00000021491	ENSEEEP00000031456	ENSEEEP00000021491	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-galactosidase.	0.422
LOC113575085	LOC113575058	ENSEEEP00000031456	ENSEEEP00000031470	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Uncharacterized protein.	0.900
LOC113575085	fuca2	ENSEEEP00000031456	ENSEEEP00000021242	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.908
LOC113575085	naga	ENSEEEP00000031456	ENSEEEP00000051335	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-galactosidase.	0.459
LOC113580477	ENSEEEP00000021491	ENSEEEP00000007430	ENSEEEP00000021491	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family.	Alpha-galactosidase.	0.442
LOC113580477	gba2	ENSEEEP00000007430	ENSEEEP00000012190	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.557
LOC113580477	gusb	ENSEEEP00000007430	ENSEEEP00000003751	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family.	Glucuronidase, beta.	0.625
LOC113580477	naga	ENSEEEP00000007430	ENSEEEP00000051335	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family.	Alpha-galactosidase.	0.442
fuca2	ENSEEEP00000021491	ENSEEEP00000021242	ENSEEEP00000021491	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-galactosidase.	0.426
fuca2	LOC113575058	ENSEEEP00000021242	ENSEEEP00000031470	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Uncharacterized protein.	0.908