(37 nodes) Catenin complex network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113585676	Cadherin 4, type 1, R-cadherin (retinal); Cadherins are calcium-dependent cell adhesion proteins. (884 aa)
	ENSEEEP00000051389	Adenomatosis polyposis coli 2. (2450 aa)
	LOC113588618	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (792 aa)
	LOC113572022	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (797 aa)
	LOC113588453	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (752 aa)
	cdh1	Cadherin 31; Cadherins are calcium-dependent cell adhesion proteins. (874 aa)
	cdh15	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (818 aa)
	ENSEEEP00000038567	Uncharacterized protein. (91 aa)
	LOC113567630	Cadherin 11, type 2, OB-cadherin (osteoblast); Cadherins are calcium-dependent cell adhesion proteins. (444 aa)
	CTNNA2	Catenin (cadherin-associated protein), alpha 2. (523 aa)
	CDH8	Cadherin 8; Cadherins are calcium-dependent cell adhesion proteins. (797 aa)
	LOC113582508	Uncharacterized protein. (747 aa)
	LOC113581132	Junction plakoglobin b. (687 aa)
	ctnna1	Uncharacterized protein. (620 aa)
	LOC113572028	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (782 aa)
	LOC113571987	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (814 aa)
	CDH18	Cadherin 18. (584 aa)
	CDH4	Cadherin 4; Cadherins are calcium-dependent cell adhesion proteins. (900 aa)
	ENSEEEP00000002079	Cadherin 26, tandem duplicate 2. (557 aa)
	cdh26	Cadherin 26, tandem duplicate 1. (681 aa)
	CDH18-2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (821 aa)
	LOC113576455	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (833 aa)
	LOC113576453	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (789 aa)
	CDH2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (721 aa)
	CTNNA1	Catenin (cadherin-associated protein), alpha 1. (395 aa)
	LOC113592206	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins. (953 aa)
	cdh22	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (793 aa)
	LOC113585629	Uncharacterized protein. (790 aa)
	ENSEEEP00000023483	CA domain-containing protein. (286 aa)
	LOC113578989	Catenin alpha 2. (358 aa)
	apc	Adenomatous polyposis coli. (2709 aa)
	CDH7	Cadherin 7; Cadherins are calcium-dependent cell adhesion proteins. (819 aa)
	LOC113580088	Catenin, beta 2. (789 aa)
	CDH20	Cadherin 20; Cadherins are calcium-dependent cell adhesion proteins. (805 aa)
	ENSEEEP00000027134	CA domain-containing protein. (279 aa)
	Cdh13	Cadherin 13, H-cadherin (heart). (411 aa)
	LOC113571997	Cadherin 6; Cadherins are calcium-dependent cell adhesion proteins. (768 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH18	CTNNA1	ENSEEEP00000001339	ENSEEEP00000013317	Cadherin 18.	Catenin (cadherin-associated protein), alpha 1.	0.468
CDH18	CTNNA2	ENSEEEP00000001339	ENSEEEP00000038315	Cadherin 18.	Catenin (cadherin-associated protein), alpha 2.	0.468
CDH18	Cdh13	ENSEEEP00000001339	ENSEEEP00000030085	Cadherin 18.	Cadherin 13, H-cadherin (heart).	0.410
CDH18	ENSEEEP00000023483	ENSEEEP00000001339	ENSEEEP00000023483	Cadherin 18.	CA domain-containing protein.	0.410
CDH18	ENSEEEP00000038567	ENSEEEP00000001339	ENSEEEP00000038567	Cadherin 18.	Uncharacterized protein.	0.468
CDH18	LOC113571987	ENSEEEP00000001339	ENSEEEP00000001320	Cadherin 18.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.437
CDH18	LOC113571997	ENSEEEP00000001339	ENSEEEP00000000751	Cadherin 18.	Cadherin 6; Cadherins are calcium-dependent cell adhesion proteins.	0.500
CDH18	LOC113576455	ENSEEEP00000001339	ENSEEEP00000008245	Cadherin 18.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.435
CDH18	LOC113578989	ENSEEEP00000001339	ENSEEEP00000024944	Cadherin 18.	Catenin alpha 2.	0.468
CDH18	LOC113580088	ENSEEEP00000001339	ENSEEEP00000026136	Cadherin 18.	Catenin, beta 2.	0.573
CDH18	LOC113581132	ENSEEEP00000001339	ENSEEEP00000033755	Cadherin 18.	Junction plakoglobin b.	0.526
CDH18	LOC113582508	ENSEEEP00000001339	ENSEEEP00000035730	Cadherin 18.	Uncharacterized protein.	0.526
CDH18	LOC113585629	ENSEEEP00000001339	ENSEEEP00000021048	Cadherin 18.	Uncharacterized protein.	0.573
CDH18	LOC113588618	ENSEEEP00000001339	ENSEEEP00000048914	Cadherin 18.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.423
CDH18	cdh1	ENSEEEP00000001339	ENSEEEP00000041640	Cadherin 18.	Cadherin 31; Cadherins are calcium-dependent cell adhesion proteins.	0.470
CDH18	ctnna1	ENSEEEP00000001339	ENSEEEP00000032428	Cadherin 18.	Uncharacterized protein.	0.468
CDH18-2	CTNNA1	ENSEEEP00000007576	ENSEEEP00000013317	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Catenin (cadherin-associated protein), alpha 1.	0.468
CDH18-2	CTNNA2	ENSEEEP00000007576	ENSEEEP00000038315	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Catenin (cadherin-associated protein), alpha 2.	0.468
CDH18-2	ENSEEEP00000038567	ENSEEEP00000007576	ENSEEEP00000038567	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.468
CDH18-2	LOC113571987	ENSEEEP00000007576	ENSEEEP00000001320	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.432