(6 nodes) NURF complex network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BPTF	Bromodomain PHD finger transcription factor. (2556 aa)
	LOC113575190	Bromodomain PHD finger transcription factor. (2850 aa)
	LOC113584177	Uncharacterized protein. (204 aa)
	cunh17orf49	Uncharacterized protein. (202 aa)
	LOC113590069	Uncharacterized protein. (973 aa)
	LOC113589980	Uncharacterized protein. (1051 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPTF	LOC113584177	ENSEEEP00000011067	ENSEEEP00000034366	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.598
BPTF	LOC113589980	ENSEEEP00000011067	ENSEEEP00000011621	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.763
BPTF	LOC113590069	ENSEEEP00000011067	ENSEEEP00000014048	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.763
BPTF	cunh17orf49	ENSEEEP00000011067	ENSEEEP00000024326	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.598
LOC113575190	LOC113584177	ENSEEEP00000041415	ENSEEEP00000034366	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.598
LOC113575190	LOC113589980	ENSEEEP00000041415	ENSEEEP00000011621	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.763
LOC113575190	LOC113590069	ENSEEEP00000041415	ENSEEEP00000014048	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.763
LOC113575190	cunh17orf49	ENSEEEP00000041415	ENSEEEP00000024326	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.598
LOC113584177	BPTF	ENSEEEP00000034366	ENSEEEP00000011067	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.598
LOC113584177	LOC113575190	ENSEEEP00000034366	ENSEEEP00000041415	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.598
LOC113589980	BPTF	ENSEEEP00000011621	ENSEEEP00000011067	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.763
LOC113589980	LOC113575190	ENSEEEP00000011621	ENSEEEP00000041415	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.763
LOC113590069	BPTF	ENSEEEP00000014048	ENSEEEP00000011067	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.763
LOC113590069	LOC113575190	ENSEEEP00000014048	ENSEEEP00000041415	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.763
cunh17orf49	BPTF	ENSEEEP00000024326	ENSEEEP00000011067	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.598
cunh17orf49	LOC113575190	ENSEEEP00000024326	ENSEEEP00000041415	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.598