(13 nodes) ISWI-type complex network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	baz1a	Bromodomain adjacent to zinc finger domain, 1A. (1441 aa)
	BPTF	Bromodomain PHD finger transcription factor. (2556 aa)
	LOC113589980	Uncharacterized protein. (1051 aa)
	LOC113590069	Uncharacterized protein. (973 aa)
	LOC113573297	Remodeling and spacing factor 1b, tandem duplicate 1. (1646 aa)
	cunh17orf49	Uncharacterized protein. (202 aa)
	pole3	CBFD_NFYB_HMF domain-containing protein. (149 aa)
	LOC113584177	Uncharacterized protein. (204 aa)
	LOC113575190	Bromodomain PHD finger transcription factor. (2850 aa)
	LOC113589248	Bromo domain-containing protein. (1372 aa)
	chrac1	CBFD_NFYB_HMF domain-containing protein. (118 aa)
	baz1b	Bromodomain adjacent to zinc finger domain, 1B. (1577 aa)
	Rsf1	Uncharacterized protein. (68 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPTF	LOC113573297	ENSEEEP00000011067	ENSEEEP00000019152	Bromodomain PHD finger transcription factor.	Remodeling and spacing factor 1b, tandem duplicate 1.	0.695
BPTF	LOC113584177	ENSEEEP00000011067	ENSEEEP00000034366	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.598
BPTF	LOC113589980	ENSEEEP00000011067	ENSEEEP00000011621	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.763
BPTF	LOC113590069	ENSEEEP00000011067	ENSEEEP00000014048	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.763
BPTF	Rsf1	ENSEEEP00000011067	ENSEEEP00000050024	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.477
BPTF	cunh17orf49	ENSEEEP00000011067	ENSEEEP00000024326	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.598
LOC113573297	BPTF	ENSEEEP00000019152	ENSEEEP00000011067	Remodeling and spacing factor 1b, tandem duplicate 1.	Bromodomain PHD finger transcription factor.	0.695
LOC113573297	LOC113575190	ENSEEEP00000019152	ENSEEEP00000041415	Remodeling and spacing factor 1b, tandem duplicate 1.	Bromodomain PHD finger transcription factor.	0.695
LOC113573297	LOC113589248	ENSEEEP00000019152	ENSEEEP00000044752	Remodeling and spacing factor 1b, tandem duplicate 1.	Bromo domain-containing protein.	0.469
LOC113573297	LOC113589980	ENSEEEP00000019152	ENSEEEP00000011621	Remodeling and spacing factor 1b, tandem duplicate 1.	Uncharacterized protein.	0.887
LOC113573297	LOC113590069	ENSEEEP00000019152	ENSEEEP00000014048	Remodeling and spacing factor 1b, tandem duplicate 1.	Uncharacterized protein.	0.887
LOC113573297	baz1b	ENSEEEP00000019152	ENSEEEP00000048562	Remodeling and spacing factor 1b, tandem duplicate 1.	Bromodomain adjacent to zinc finger domain, 1B.	0.457
LOC113573297	chrac1	ENSEEEP00000019152	ENSEEEP00000046772	Remodeling and spacing factor 1b, tandem duplicate 1.	CBFD_NFYB_HMF domain-containing protein.	0.432
LOC113575190	LOC113573297	ENSEEEP00000041415	ENSEEEP00000019152	Bromodomain PHD finger transcription factor.	Remodeling and spacing factor 1b, tandem duplicate 1.	0.695
LOC113575190	LOC113584177	ENSEEEP00000041415	ENSEEEP00000034366	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.598
LOC113575190	LOC113589980	ENSEEEP00000041415	ENSEEEP00000011621	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.763
LOC113575190	LOC113590069	ENSEEEP00000041415	ENSEEEP00000014048	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.763
LOC113575190	Rsf1	ENSEEEP00000041415	ENSEEEP00000050024	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.477
LOC113575190	cunh17orf49	ENSEEEP00000041415	ENSEEEP00000024326	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.598
LOC113584177	BPTF	ENSEEEP00000034366	ENSEEEP00000011067	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.598