(9 nodes) sno(s)RNA 3-end processing network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	exosc4	Uncharacterized protein. (245 aa)
	dkc1	PUA domain-containing protein. (525 aa)
	exosc10	HRDC domain-containing protein. (887 aa)
	larp7	Uncharacterized protein. (553 aa)
	exosc6	RNase_PH domain-containing protein. (271 aa)
	exosc3	KH_dom_type_1 domain-containing protein. (245 aa)
	exosc5	Uncharacterized protein. (218 aa)
	fbl	Uncharacterized protein. (313 aa)
	exosc2	Uncharacterized protein. (295 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dkc1	exosc10	ENSEEEP00000043322	ENSEEEP00000041080	PUA domain-containing protein.	HRDC domain-containing protein.	0.438
dkc1	fbl	ENSEEEP00000043322	ENSEEEP00000023853	PUA domain-containing protein.	Uncharacterized protein.	0.998
exosc10	dkc1	ENSEEEP00000041080	ENSEEEP00000043322	HRDC domain-containing protein.	PUA domain-containing protein.	0.438
exosc10	exosc2	ENSEEEP00000041080	ENSEEEP00000010714	HRDC domain-containing protein.	Uncharacterized protein.	0.998
exosc10	exosc3	ENSEEEP00000041080	ENSEEEP00000030911	HRDC domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.998
exosc10	exosc4	ENSEEEP00000041080	ENSEEEP00000023232	HRDC domain-containing protein.	Uncharacterized protein.	0.998
exosc10	exosc5	ENSEEEP00000041080	ENSEEEP00000030449	HRDC domain-containing protein.	Uncharacterized protein.	0.998
exosc10	exosc6	ENSEEEP00000041080	ENSEEEP00000034808	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.997
exosc10	fbl	ENSEEEP00000041080	ENSEEEP00000023853	HRDC domain-containing protein.	Uncharacterized protein.	0.977
exosc2	exosc10	ENSEEEP00000010714	ENSEEEP00000041080	Uncharacterized protein.	HRDC domain-containing protein.	0.998
exosc2	exosc3	ENSEEEP00000010714	ENSEEEP00000030911	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
exosc2	exosc4	ENSEEEP00000010714	ENSEEEP00000023232	Uncharacterized protein.	Uncharacterized protein.	0.999
exosc2	exosc5	ENSEEEP00000010714	ENSEEEP00000030449	Uncharacterized protein.	Uncharacterized protein.	0.999
exosc2	exosc6	ENSEEEP00000010714	ENSEEEP00000034808	Uncharacterized protein.	RNase_PH domain-containing protein.	0.997
exosc2	fbl	ENSEEEP00000010714	ENSEEEP00000023853	Uncharacterized protein.	Uncharacterized protein.	0.843
exosc3	exosc10	ENSEEEP00000030911	ENSEEEP00000041080	KH_dom_type_1 domain-containing protein.	HRDC domain-containing protein.	0.998
exosc3	exosc2	ENSEEEP00000030911	ENSEEEP00000010714	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.999
exosc3	exosc4	ENSEEEP00000030911	ENSEEEP00000023232	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.999
exosc3	exosc5	ENSEEEP00000030911	ENSEEEP00000030449	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.999
exosc3	exosc6	ENSEEEP00000030911	ENSEEEP00000034808	KH_dom_type_1 domain-containing protein.	RNase_PH domain-containing protein.	0.998