(14 nodes) Protein localization to endosome network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB35	Uncharacterized protein. (199 aa)
	ENSEEEP00000006807	Uncharacterized protein. (143 aa)
	LOC113592118	RAB35, member RAS oncogene family b. (199 aa)
	akap11	A kinase (PRKA) anchor protein 11. (1808 aa)
	LOC113585831	CAP-ZIP_m domain-containing protein. (1363 aa)
	LOC113578453	Si:dkey-4p15.3; Belongs to the heat shock protein 70 family. (671 aa)
	ARF6	ADP-ribosylation factor 6a. (116 aa)
	ENSEEEP00000027339	Uncharacterized protein. (111 aa)
	vps35	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (821 aa)
	LOC113580870	Uncharacterized protein. (209 aa)
	ENSEEEP00000044810	Uncharacterized protein. (113 aa)
	LOC113588290	Uncharacterized protein. (149 aa)
	ENSEEEP00000052597	Uncharacterized protein. (311 aa)
	ENSEEEP00000052598	Uncharacterized protein. (154 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000006807	ENSEEEP00000052597	ENSEEEP00000006807	ENSEEEP00000052597	Uncharacterized protein.	Uncharacterized protein.	0.830
ENSEEEP00000052597	ENSEEEP00000006807	ENSEEEP00000052597	ENSEEEP00000006807	Uncharacterized protein.	Uncharacterized protein.	0.830
ENSEEEP00000052597	LOC113588290	ENSEEEP00000052597	ENSEEEP00000045180	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC113580870	RAB35	ENSEEEP00000028649	ENSEEEP00000003785	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC113585831	vps35	ENSEEEP00000017495	ENSEEEP00000028035	CAP-ZIP_m domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.788
LOC113588290	ENSEEEP00000052597	ENSEEEP00000045180	ENSEEEP00000052597	Uncharacterized protein.	Uncharacterized protein.	0.900
RAB35	LOC113580870	ENSEEEP00000003785	ENSEEEP00000028649	Uncharacterized protein.	Uncharacterized protein.	0.901
vps35	LOC113585831	ENSEEEP00000028035	ENSEEEP00000017495	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	CAP-ZIP_m domain-containing protein.	0.788