7 items (Electrophorus electricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	blm	BLM RecQ like helicase. (1281 aa)
	xrn1	5'-3' exoribonuclease 1. (1689 aa)
	LOC113569058	AAA_23 domain-containing protein. (469 aa)
	ENSEEEP00000007003	AAA_23 domain-containing protein. (53 aa)
	rad50	RAD50 homolog, double strand break repair protein. (1181 aa)
	lonp1	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (980 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1001 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000007003	blm	ENSEEEP00000007003	ENSEEEP00000035037	AAA_23 domain-containing protein.	BLM RecQ like helicase.	0.795
LOC113569058	blm	ENSEEEP00000005699	ENSEEEP00000035037	AAA_23 domain-containing protein.	BLM RecQ like helicase.	0.795
LOC113569058	rad50	ENSEEEP00000005699	ENSEEEP00000013894	AAA_23 domain-containing protein.	RAD50 homolog, double strand break repair protein.	0.958
blm	ENSEEEP00000007003	ENSEEEP00000035037	ENSEEEP00000007003	BLM RecQ like helicase.	AAA_23 domain-containing protein.	0.795
blm	LOC113569058	ENSEEEP00000035037	ENSEEEP00000005699	BLM RecQ like helicase.	AAA_23 domain-containing protein.	0.795
blm	rad50	ENSEEEP00000035037	ENSEEEP00000013894	BLM RecQ like helicase.	RAD50 homolog, double strand break repair protein.	0.795
rad50	LOC113569058	ENSEEEP00000013894	ENSEEEP00000005699	RAD50 homolog, double strand break repair protein.	AAA_23 domain-containing protein.	0.958
rad50	blm	ENSEEEP00000013894	ENSEEEP00000035037	RAD50 homolog, double strand break repair protein.	BLM RecQ like helicase.	0.795