(12 nodes) Dendritic spine morphogenesis network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ephb3	EPH receptor B3. (999 aa)
	LOC113584421	SH3 and multiple ankyrin repeat domains 3b. (1602 aa)
	LOC113586656	Uncharacterized protein. (191 aa)
	LOC113575458	Uncharacterized protein. (191 aa)
	LOC113580523	SH3 and multiple ankyrin repeat domains 3a. (1676 aa)
	prmt3	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (520 aa)
	ENSEEEP00000045279	Uncharacterized protein. (254 aa)
	LOC113570125	Eph receptor B3a. (915 aa)
	ENSEEEP00000026323	Dedicator of cytokinesis 10; Belongs to the DOCK family. (670 aa)
	ENSEEEP00000026312	Dedicator of cytokinesis 10; Belongs to the DOCK family. (1188 aa)
	ENSEEEP00000021788	PDZ domain-containing protein. (271 aa)
	ENSEEEP00000017591	FERM_f0 domain-containing protein. (124 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000026312	ENSEEEP00000026323	ENSEEEP00000026312	ENSEEEP00000026323	Dedicator of cytokinesis 10; Belongs to the DOCK family.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.874
ENSEEEP00000026312	LOC113575458	ENSEEEP00000026312	ENSEEEP00000014086	Dedicator of cytokinesis 10; Belongs to the DOCK family.	Uncharacterized protein.	0.785
ENSEEEP00000026312	LOC113586656	ENSEEEP00000026312	ENSEEEP00000012752	Dedicator of cytokinesis 10; Belongs to the DOCK family.	Uncharacterized protein.	0.785
ENSEEEP00000026323	ENSEEEP00000026312	ENSEEEP00000026323	ENSEEEP00000026312	Dedicator of cytokinesis 10; Belongs to the DOCK family.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.874
ENSEEEP00000026323	LOC113575458	ENSEEEP00000026323	ENSEEEP00000014086	Dedicator of cytokinesis 10; Belongs to the DOCK family.	Uncharacterized protein.	0.785
ENSEEEP00000026323	LOC113586656	ENSEEEP00000026323	ENSEEEP00000012752	Dedicator of cytokinesis 10; Belongs to the DOCK family.	Uncharacterized protein.	0.785
LOC113575458	ENSEEEP00000026312	ENSEEEP00000014086	ENSEEEP00000026312	Uncharacterized protein.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.785
LOC113575458	ENSEEEP00000026323	ENSEEEP00000014086	ENSEEEP00000026323	Uncharacterized protein.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.785
LOC113586656	ENSEEEP00000026312	ENSEEEP00000012752	ENSEEEP00000026312	Uncharacterized protein.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.785
LOC113586656	ENSEEEP00000026323	ENSEEEP00000012752	ENSEEEP00000026323	Uncharacterized protein.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.785