(41 nodes) Regulation of cilium assembly network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113579254	Homeobox domain-containing protein. (255 aa)
	ENSEEEP00000001722	KASH domain-containing protein. (915 aa)
	ENSEEEP00000001728	Uncharacterized protein. (436 aa)
	Syne1	Uncharacterized protein. (1355 aa)
	tbc1d30	TBC1 domain family, member 30. (618 aa)
	wrap73	Uncharacterized protein. (448 aa)
	rabep2	Uncharacterized protein. (485 aa)
	LOC113570376	Cyclin dependent kinase like 5. (799 aa)
	LOC113578261	Cyclin-dependent kinase-like 5. (1065 aa)
	ENSEEEP00000010791	KASH domain-containing protein. (824 aa)
	LOC113591502	Uncharacterized protein. (943 aa)
	tesk1	Protein kinase domain-containing protein. (724 aa)
	ppp1r35	PPP1R35_C domain-containing protein. (282 aa)
	cntrob	Uncharacterized protein. (992 aa)
	cep120	Uncharacterized protein. (982 aa)
	tapt1	Transmembrane anterior posterior transformation 1b. (562 aa)
	LOC113572386	Cylindromatosis (turban tumor syndrome), b. (493 aa)
	ENSEEEP00000022992	Cylindromatosis (turban tumor syndrome), like. (676 aa)
	cep97	Centrosomal protein 97. (619 aa)
	ENSEEEP00000026352	Uncharacterized protein. (4408 aa)
	ENSEEEP00000026357	Spectrin repeat containing, nuclear envelope 2b. (803 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	LOC113570916	KASH domain-containing protein. (2604 aa)
	ENSEEEP00000028427	Uncharacterized protein. (409 aa)
	ENSEEEP00000028434	Uncharacterized protein. (101 aa)
	ENSEEEP00000028444	Uncharacterized protein. (734 aa)
	entr1	Uncharacterized protein. (97 aa)
	LOC113570774	Transmembrane anterior posterior transformation 1a. (545 aa)
	mapk15	Mitogen-activated protein kinase. (509 aa)
	ENSEEEP00000034118	Uncharacterized protein. (251 aa)
	atmin	ATM interactor. (757 aa)
	ENSEEEP00000037529	Bardet-Biedl syndrome 4. (356 aa)
	ENSEEEP00000037590	Uncharacterized protein. (563 aa)
	ENSEEEP00000038903	Uncharacterized protein. (389 aa)
	tesk2	Testis associated actin remodelling kinase 2. (630 aa)
	LOC113574729	Microtubule-associated protein. (611 aa)
	ENSEEEP00000047095	Uncharacterized protein. (296 aa)
	cyld	Uncharacterized protein; Belongs to the peptidase C19 family. (964 aa)
	ift88	Intraflagellar transport 88 homolog. (846 aa)
	ift140	Intraflagellar transport 140 homolog (Chlamydomonas). (1456 aa)
	zmynd10	MYND-type domain-containing protein. (462 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000001722	ENSEEEP00000001728	ENSEEEP00000001722	ENSEEEP00000001728	KASH domain-containing protein.	Uncharacterized protein.	0.505
ENSEEEP00000001722	ENSEEEP00000028427	ENSEEEP00000001722	ENSEEEP00000028427	KASH domain-containing protein.	Uncharacterized protein.	0.685
ENSEEEP00000001722	ENSEEEP00000028444	ENSEEEP00000001722	ENSEEEP00000028444	KASH domain-containing protein.	Uncharacterized protein.	0.574
ENSEEEP00000001722	Syne1	ENSEEEP00000001722	ENSEEEP00000001843	KASH domain-containing protein.	Uncharacterized protein.	0.604
ENSEEEP00000001728	ENSEEEP00000001722	ENSEEEP00000001728	ENSEEEP00000001722	Uncharacterized protein.	KASH domain-containing protein.	0.505
ENSEEEP00000001728	ENSEEEP00000028444	ENSEEEP00000001728	ENSEEEP00000028444	Uncharacterized protein.	Uncharacterized protein.	0.467
ENSEEEP00000001728	LOC113570916	ENSEEEP00000001728	ENSEEEP00000028418	Uncharacterized protein.	KASH domain-containing protein.	0.916
ENSEEEP00000001728	Syne1	ENSEEEP00000001728	ENSEEEP00000001843	Uncharacterized protein.	Uncharacterized protein.	0.935
ENSEEEP00000010791	ENSEEEP00000028444	ENSEEEP00000010791	ENSEEEP00000028444	KASH domain-containing protein.	Uncharacterized protein.	0.755
ENSEEEP00000010791	ENSEEEP00000034118	ENSEEEP00000010791	ENSEEEP00000034118	KASH domain-containing protein.	Uncharacterized protein.	0.429
ENSEEEP00000026357	ENSEEEP00000028444	ENSEEEP00000026357	ENSEEEP00000028444	Spectrin repeat containing, nuclear envelope 2b.	Uncharacterized protein.	0.867
ENSEEEP00000026357	ENSEEEP00000034118	ENSEEEP00000026357	ENSEEEP00000034118	Spectrin repeat containing, nuclear envelope 2b.	Uncharacterized protein.	0.410
ENSEEEP00000028427	ENSEEEP00000001722	ENSEEEP00000028427	ENSEEEP00000001722	Uncharacterized protein.	KASH domain-containing protein.	0.685
ENSEEEP00000028427	ENSEEEP00000028444	ENSEEEP00000028427	ENSEEEP00000028444	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSEEEP00000028427	LOC113570916	ENSEEEP00000028427	ENSEEEP00000028418	Uncharacterized protein.	KASH domain-containing protein.	0.906
ENSEEEP00000028427	Syne1	ENSEEEP00000028427	ENSEEEP00000001843	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSEEEP00000028444	ENSEEEP00000001722	ENSEEEP00000028444	ENSEEEP00000001722	Uncharacterized protein.	KASH domain-containing protein.	0.574
ENSEEEP00000028444	ENSEEEP00000001728	ENSEEEP00000028444	ENSEEEP00000001728	Uncharacterized protein.	Uncharacterized protein.	0.467
ENSEEEP00000028444	ENSEEEP00000010791	ENSEEEP00000028444	ENSEEEP00000010791	Uncharacterized protein.	KASH domain-containing protein.	0.755
ENSEEEP00000028444	ENSEEEP00000026357	ENSEEEP00000028444	ENSEEEP00000026357	Uncharacterized protein.	Spectrin repeat containing, nuclear envelope 2b.	0.867