62 items (Electrophorus electricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sh3bp5l	Uncharacterized protein. (458 aa)
	gtf2h4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (473 aa)
	gtf2e2	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (318 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (535 aa)
	taf13	Uncharacterized protein. (124 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (667 aa)
	ENSEEEP00000013584	Regulation of nuclear pre-mRNA domain containing 2a. (1128 aa)
	ENSEEEP00000012815	annotation not available (105 aa)
	LOC113592136	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1705 aa)
	LOC113577105	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (253 aa)
	wdr47	WD repeat domain 47a. (924 aa)
	gtf2a1l	General transcription factor IIA, 1-like. (347 aa)
	polr2j	RNA_pol_L_2 domain-containing protein. (117 aa)
	LOC113586096	WD repeat domain 47b. (849 aa)
	cdk20	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (344 aa)
	LOC113569258	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (462 aa)
	tbp	Uncharacterized protein. (297 aa)
	taf8	BTP domain-containing protein. (307 aa)
	LOC113584288	TAFH domain-containing protein. (877 aa)
	ENSEEEP00000002053	TAF4 domain-containing protein. (282 aa)
	paf1	Uncharacterized protein. (513 aa)
	polr2k	Uncharacterized protein. (58 aa)
	taf5	Uncharacterized protein. (742 aa)
	LOC113586408	Uncharacterized protein. (436 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (143 aa)
	gtf2e1	HTH TFE/IIEalpha-type domain-containing protein. (448 aa)
	wdr61	WD_REPEATS_REGION domain-containing protein. (305 aa)
	gtf2h1	Uncharacterized protein. (607 aa)
	Recql5	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (970 aa)
	rprd2	Regulation of nuclear pre-mRNA domain containing 2b. (1095 aa)
	gtf2h3	General transcription factor IIH, polypeptide 3. (293 aa)
	mnat1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
	gtf2a2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	polr2m	Uncharacterized protein. (343 aa)
	gtf2h2c	General transcription factor IIH subunit. (398 aa)
	cinp	Uncharacterized protein. (224 aa)
	LOC113579649	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (548 aa)
	POLR2E	Uncharacterized protein. (210 aa)
	rtf1	Plus3 domain-containing protein. (678 aa)
	polr2g	S1 domain-containing protein. (172 aa)
	ENSEEEP00000046546	TAF4 domain-containing protein. (277 aa)
	ccnh	CYCLIN domain-containing protein; Belongs to the cyclin family. (321 aa)
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1187 aa)
	ENSEEEP00000033236	Regulation of nuclear pre-mRNA domain containing 1A. (312 aa)
	taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (774 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	ENSEEEP00000031728	Uncharacterized protein. (384 aa)
	ctr9	TPR_REGION domain-containing protein. (1159 aa)
	gtf2h5	Uncharacterized protein. (71 aa)
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (265 aa)
	cdk7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (345 aa)
	taf2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1155 aa)
	rprd1b	Regulation of nuclear pre-mRNA domain containing 1B. (336 aa)
	rpap2	RTR1-type domain-containing protein. (625 aa)
	LOC113585673	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (517 aa)
	ercc3	Uncharacterized protein. (823 aa)
	taf11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (207 aa)
	gtf2a1	Uncharacterized protein. (386 aa)
	supt3h	Uncharacterized protein. (375 aa)
	cdc73	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (401 aa)
	pex2	RING-type domain-containing protein. (310 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEEP00000002053	ENSEEEP00000012815	ENSEEEP00000002053	ENSEEEP00000012815	TAF4 domain-containing protein.	annotation not available	0.640
ENSEEEP00000002053	ENSEEEP00000031728	ENSEEEP00000002053	ENSEEEP00000031728	TAF4 domain-containing protein.	Uncharacterized protein.	0.617
ENSEEEP00000002053	LOC113569258	ENSEEEP00000002053	ENSEEEP00000006448	TAF4 domain-containing protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.664
ENSEEEP00000002053	LOC113577105	ENSEEEP00000002053	ENSEEEP00000011434	TAF4 domain-containing protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.704
ENSEEEP00000002053	LOC113579649	ENSEEEP00000002053	ENSEEEP00000035805	TAF4 domain-containing protein.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.828
ENSEEEP00000002053	LOC113592136	ENSEEEP00000002053	ENSEEEP00000012331	TAF4 domain-containing protein.	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.952
ENSEEEP00000002053	POLR2E	ENSEEEP00000002053	ENSEEEP00000048765	TAF4 domain-containing protein.	Uncharacterized protein.	0.715
ENSEEEP00000002053	ccnh	ENSEEEP00000002053	ENSEEEP00000046493	TAF4 domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.715
ENSEEEP00000002053	cdk20	ENSEEEP00000002053	ENSEEEP00000006720	TAF4 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.621
ENSEEEP00000002053	cdk7	ENSEEEP00000002053	ENSEEEP00000027769	TAF4 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.621
ENSEEEP00000002053	ercc3	ENSEEEP00000002053	ENSEEEP00000022614	TAF4 domain-containing protein.	Uncharacterized protein.	0.716
ENSEEEP00000002053	gtf2a1	ENSEEEP00000002053	ENSEEEP00000021294	TAF4 domain-containing protein.	Uncharacterized protein.	0.758
ENSEEEP00000002053	gtf2a1l	ENSEEEP00000002053	ENSEEEP00000009415	TAF4 domain-containing protein.	General transcription factor IIA, 1-like.	0.774
ENSEEEP00000002053	gtf2a2	ENSEEEP00000002053	ENSEEEP00000037548	TAF4 domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.835
ENSEEEP00000002053	gtf2e1	ENSEEEP00000002053	ENSEEEP00000039207	TAF4 domain-containing protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.678
ENSEEEP00000002053	gtf2e2	ENSEEEP00000002053	ENSEEEP00000017628	TAF4 domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.793
ENSEEEP00000002053	gtf2f1	ENSEEEP00000002053	ENSEEEP00000015715	TAF4 domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.775
ENSEEEP00000002053	gtf2f2	ENSEEEP00000002053	ENSEEEP00000027817	TAF4 domain-containing protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.704
ENSEEEP00000002053	gtf2h1	ENSEEEP00000002053	ENSEEEP00000037720	TAF4 domain-containing protein.	Uncharacterized protein.	0.715
ENSEEEP00000002053	gtf2h2c	ENSEEEP00000002053	ENSEEEP00000036280	TAF4 domain-containing protein.	General transcription factor IIH subunit.	0.713