(47 nodes) Bromodomain network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113588922	E1A binding protein p300 b. (1825 aa)
	LOC113573063	Bromodomain and PHD finger containing, 3a. (1211 aa)
	brpf1	Bromodomain and PHD finger containing, 1. (1236 aa)
	LOC113587607	Bromodomain, testis-specific. (1021 aa)
	LOC113588724	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (793 aa)
	LOC113578809	Bromodomain containing 2b. (757 aa)
	LOC113589014	Uncharacterized protein. (1581 aa)
	atad2	Bromo domain-containing protein. (1398 aa)
	LOC113573730	Uncharacterized protein. (667 aa)
	baz1a	Bromodomain adjacent to zinc finger domain, 1A. (1441 aa)
	rpn1	Uncharacterized protein. (1629 aa)
	BPTF	Bromodomain PHD finger transcription factor. (2556 aa)
	LOC113579737	Uncharacterized protein. (1583 aa)
	LOC113592136	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1705 aa)
	smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1659 aa)
	LOC113584996	Bromodomain and WD repeat domain containing 1. (1285 aa)
	LOC113592224	Bromo domain-containing protein. (84 aa)
	Baz2b	Bromo domain-containing protein. (240 aa)
	LOC113580680	CREB binding protein a. (1916 aa)
	brd9	Bromo domain-containing protein. (637 aa)
	KIAA2026	KIAA2026. (1866 aa)
	LOC113585674	Zinc finger, MYND-type containing 8. (1206 aa)
	atad2b	ATPase family, AAA domain containing 2B. (1390 aa)
	ENSEEEP00000028733	Uncharacterized protein. (345 aa)
	brd8	Bromodomain containing 8. (831 aa)
	LOC113586923	Tripartite motif containing 66. (812 aa)
	ENSEEEP00000031441	Si:dkey-226m8.10. (204 aa)
	brd2	Bromodomain containing 2a. (803 aa)
	zmynd11	Zinc finger, MYND-type containing 11. (635 aa)
	LOC113582559	Uncharacterized protein. (1082 aa)
	brd7	Bromo domain-containing protein. (663 aa)
	LOC113575190	Bromodomain PHD finger transcription factor. (2850 aa)
	ENSEEEP00000043171	Uncharacterized protein. (628 aa)
	baz2a	Uncharacterized protein. (2485 aa)
	LOC113581867	Bromodomain containing 4. (1338 aa)
	LOC113573541	Uncharacterized protein. (1072 aa)
	LOC113577982	Polybromo 1, like. (1715 aa)
	LOC113589248	Bromo domain-containing protein. (1372 aa)
	brd1	Uncharacterized protein. (1173 aa)
	crebbp	CREB binding protein b. (2451 aa)
	trim33	Uncharacterized protein. (1208 aa)
	LOC113577379	Bromodomain and PHD finger containing, 3b. (1166 aa)
	baz1b	Bromodomain adjacent to zinc finger domain, 1B. (1577 aa)
	LOC113577525	Uncharacterized protein. (2299 aa)
	phip	Uncharacterized protein. (1871 aa)
	brd3	Bromodomain containing 3b. (653 aa)
	LOC113576366	Uncharacterized protein. (1241 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Baz2b	LOC113588724	ENSEEEP00000016468	ENSEEEP00000002023	Bromo domain-containing protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.401
Baz2b	LOC113588922	ENSEEEP00000016468	ENSEEEP00000028262	Bromo domain-containing protein.	E1A binding protein p300 b.	0.401
Baz2b	LOC113589248	ENSEEEP00000016468	ENSEEEP00000044752	Bromo domain-containing protein.	Bromo domain-containing protein.	0.401
Baz2b	LOC113592224	ENSEEEP00000016468	ENSEEEP00000016044	Bromo domain-containing protein.	Bromo domain-containing protein.	0.401
ENSEEEP00000031441	LOC113577982	ENSEEEP00000031441	ENSEEEP00000044732	Si:dkey-226m8.10.	Polybromo 1, like.	0.619
ENSEEEP00000031441	brd7	ENSEEEP00000031441	ENSEEEP00000041220	Si:dkey-226m8.10.	Bromo domain-containing protein.	0.403
ENSEEEP00000031441	brd9	ENSEEEP00000031441	ENSEEEP00000021392	Si:dkey-226m8.10.	Bromo domain-containing protein.	0.403
ENSEEEP00000031441	rpn1	ENSEEEP00000031441	ENSEEEP00000010145	Si:dkey-226m8.10.	Uncharacterized protein.	0.619
ENSEEEP00000043171	LOC113588922	ENSEEEP00000043171	ENSEEEP00000028262	Uncharacterized protein.	E1A binding protein p300 b.	0.497
ENSEEEP00000043171	LOC113592136	ENSEEEP00000043171	ENSEEEP00000012331	Uncharacterized protein.	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.519
KIAA2026	LOC113592136	ENSEEEP00000022049	ENSEEEP00000012331	KIAA2026.	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.502
LOC113573063	LOC113582559	ENSEEEP00000000410	ENSEEEP00000036079	Bromodomain and PHD finger containing, 3a.	Uncharacterized protein.	0.589
LOC113573063	LOC113588922	ENSEEEP00000000410	ENSEEEP00000028262	Bromodomain and PHD finger containing, 3a.	E1A binding protein p300 b.	0.491
LOC113573063	brd1	ENSEEEP00000000410	ENSEEEP00000045579	Bromodomain and PHD finger containing, 3a.	Uncharacterized protein.	0.583
LOC113573063	brd7	ENSEEEP00000000410	ENSEEEP00000041220	Bromodomain and PHD finger containing, 3a.	Bromo domain-containing protein.	0.586
LOC113573063	brd9	ENSEEEP00000000410	ENSEEEP00000021392	Bromodomain and PHD finger containing, 3a.	Bromo domain-containing protein.	0.626
LOC113573063	brpf1	ENSEEEP00000000410	ENSEEEP00000000421	Bromodomain and PHD finger containing, 3a.	Bromodomain and PHD finger containing, 1.	0.585
LOC113573730	LOC113588922	ENSEEEP00000008122	ENSEEEP00000028262	Uncharacterized protein.	E1A binding protein p300 b.	0.497
LOC113573730	LOC113592136	ENSEEEP00000008122	ENSEEEP00000012331	Uncharacterized protein.	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.519
LOC113577379	LOC113582559	ENSEEEP00000047336	ENSEEEP00000036079	Bromodomain and PHD finger containing, 3b.	Uncharacterized protein.	0.584