(8 nodes) Chaperonin TCP-1, conserved site network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cct4	T-complex protein 1 subunit delta. (548 aa)
	cct3	T-complex protein 1 subunit gamma. (542 aa)
	cct6a	Uncharacterized protein. (540 aa)
	cct2	Uncharacterized protein. (535 aa)
	tcp1	Uncharacterized protein. (558 aa)
	cct8	Uncharacterized protein. (559 aa)
	cct7	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (565 aa)
	cct5	Uncharacterized protein. (541 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cct2	cct3	ENSEEEP00000043689	ENSEEEP00000036149	Uncharacterized protein.	T-complex protein 1 subunit gamma.	0.999
cct2	cct4	ENSEEEP00000043689	ENSEEEP00000035923	Uncharacterized protein.	T-complex protein 1 subunit delta.	0.999
cct2	cct5	ENSEEEP00000043689	ENSEEEP00000002456	Uncharacterized protein.	Uncharacterized protein.	0.999
cct2	cct6a	ENSEEEP00000043689	ENSEEEP00000040645	Uncharacterized protein.	Uncharacterized protein.	0.999
cct2	cct7	ENSEEEP00000043689	ENSEEEP00000018226	Uncharacterized protein.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
cct2	cct8	ENSEEEP00000043689	ENSEEEP00000025068	Uncharacterized protein.	Uncharacterized protein.	0.999
cct2	tcp1	ENSEEEP00000043689	ENSEEEP00000045106	Uncharacterized protein.	Uncharacterized protein.	0.999
cct3	cct2	ENSEEEP00000036149	ENSEEEP00000043689	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.999
cct3	cct4	ENSEEEP00000036149	ENSEEEP00000035923	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit delta.	0.999
cct3	cct5	ENSEEEP00000036149	ENSEEEP00000002456	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.999
cct3	cct6a	ENSEEEP00000036149	ENSEEEP00000040645	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.999
cct3	cct7	ENSEEEP00000036149	ENSEEEP00000018226	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
cct3	cct8	ENSEEEP00000036149	ENSEEEP00000025068	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.999
cct3	tcp1	ENSEEEP00000036149	ENSEEEP00000045106	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.999
cct4	cct2	ENSEEEP00000035923	ENSEEEP00000043689	T-complex protein 1 subunit delta.	Uncharacterized protein.	0.999
cct4	cct3	ENSEEEP00000035923	ENSEEEP00000036149	T-complex protein 1 subunit delta.	T-complex protein 1 subunit gamma.	0.999
cct4	cct5	ENSEEEP00000035923	ENSEEEP00000002456	T-complex protein 1 subunit delta.	Uncharacterized protein.	0.999
cct4	cct6a	ENSEEEP00000035923	ENSEEEP00000040645	T-complex protein 1 subunit delta.	Uncharacterized protein.	0.999
cct4	cct7	ENSEEEP00000035923	ENSEEEP00000018226	T-complex protein 1 subunit delta.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
cct4	cct8	ENSEEEP00000035923	ENSEEEP00000025068	T-complex protein 1 subunit delta.	Uncharacterized protein.	0.999