(5 nodes) EB1, C-terminal network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113586551	Uncharacterized protein. (273 aa)
	mapre2	Uncharacterized protein. (331 aa)
	LOC113579076	Uncharacterized protein. (296 aa)
	mapre3	Uncharacterized protein. (263 aa)
	LOC113576381	Uncharacterized protein. (258 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC113576381	LOC113586551	ENSEEEP00000051937	ENSEEEP00000003646	Uncharacterized protein.	Uncharacterized protein.	0.536
LOC113576381	mapre2	ENSEEEP00000051937	ENSEEEP00000022266	Uncharacterized protein.	Uncharacterized protein.	0.539
LOC113576381	mapre3	ENSEEEP00000051937	ENSEEEP00000043796	Uncharacterized protein.	Uncharacterized protein.	0.537
LOC113579076	LOC113586551	ENSEEEP00000034235	ENSEEEP00000003646	Uncharacterized protein.	Uncharacterized protein.	0.539
LOC113579076	mapre2	ENSEEEP00000034235	ENSEEEP00000022266	Uncharacterized protein.	Uncharacterized protein.	0.544
LOC113579076	mapre3	ENSEEEP00000034235	ENSEEEP00000043796	Uncharacterized protein.	Uncharacterized protein.	0.539
LOC113586551	LOC113576381	ENSEEEP00000003646	ENSEEEP00000051937	Uncharacterized protein.	Uncharacterized protein.	0.536
LOC113586551	LOC113579076	ENSEEEP00000003646	ENSEEEP00000034235	Uncharacterized protein.	Uncharacterized protein.	0.539
mapre2	LOC113576381	ENSEEEP00000022266	ENSEEEP00000051937	Uncharacterized protein.	Uncharacterized protein.	0.539
mapre2	LOC113579076	ENSEEEP00000022266	ENSEEEP00000034235	Uncharacterized protein.	Uncharacterized protein.	0.544
mapre3	LOC113576381	ENSEEEP00000043796	ENSEEEP00000051937	Uncharacterized protein.	Uncharacterized protein.	0.537
mapre3	LOC113579076	ENSEEEP00000043796	ENSEEEP00000034235	Uncharacterized protein.	Uncharacterized protein.	0.539