(10 nodes) Cullin network (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113584365	Cullin 5a; Belongs to the cullin family. (749 aa)
	LOC113584345	CULLIN_2 domain-containing protein; Belongs to the cullin family. (777 aa)
	cul4b	CULLIN_2 domain-containing protein; Belongs to the cullin family. (862 aa)
	CUL7	Uncharacterized protein; Belongs to the cullin family. (2572 aa)
	LOC113591897	CULLIN_2 domain-containing protein; Belongs to the cullin family. (560 aa)
	LOC113592334	CULLIN_2 domain-containing protein; Belongs to the cullin family. (560 aa)
	cul3	Cullin 3; Belongs to the cullin family. (734 aa)
	cul4a	Cullin 4A; Belongs to the cullin family. (782 aa)
	cul2	Cullin 2; Belongs to the cullin family. (758 aa)
	LOC113567833	CULLIN_2 domain-containing protein; Belongs to the cullin family. (232 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL7	LOC113567833	ENSEEEP00000031567	ENSEEEP00000010585	Uncharacterized protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.461
CUL7	LOC113592334	ENSEEEP00000031567	ENSEEEP00000029458	Uncharacterized protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.461
CUL7	cul2	ENSEEEP00000031567	ENSEEEP00000012200	Uncharacterized protein; Belongs to the cullin family.	Cullin 2; Belongs to the cullin family.	0.540
CUL7	cul3	ENSEEEP00000031567	ENSEEEP00000026610	Uncharacterized protein; Belongs to the cullin family.	Cullin 3; Belongs to the cullin family.	0.461
LOC113567833	CUL7	ENSEEEP00000010585	ENSEEEP00000031567	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the cullin family.	0.461
LOC113567833	LOC113584345	ENSEEEP00000010585	ENSEEEP00000002811	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.529
LOC113567833	LOC113584365	ENSEEEP00000010585	ENSEEEP00000003439	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 5a; Belongs to the cullin family.	0.573
LOC113567833	LOC113591897	ENSEEEP00000010585	ENSEEEP00000035758	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.621
LOC113567833	LOC113592334	ENSEEEP00000010585	ENSEEEP00000029458	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.942
LOC113567833	cul2	ENSEEEP00000010585	ENSEEEP00000012200	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 2; Belongs to the cullin family.	0.718
LOC113584345	LOC113567833	ENSEEEP00000002811	ENSEEEP00000010585	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.529
LOC113584345	LOC113584365	ENSEEEP00000002811	ENSEEEP00000003439	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 5a; Belongs to the cullin family.	0.559
LOC113584345	LOC113592334	ENSEEEP00000002811	ENSEEEP00000029458	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.529
LOC113584345	cul2	ENSEEEP00000002811	ENSEEEP00000012200	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 2; Belongs to the cullin family.	0.654
LOC113584345	cul3	ENSEEEP00000002811	ENSEEEP00000026610	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 3; Belongs to the cullin family.	0.529
LOC113584345	cul4a	ENSEEEP00000002811	ENSEEEP00000025394	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 4A; Belongs to the cullin family.	0.403
LOC113584345	cul4b	ENSEEEP00000002811	ENSEEEP00000030419	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.403
LOC113584365	LOC113567833	ENSEEEP00000003439	ENSEEEP00000010585	Cullin 5a; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.573
LOC113584365	LOC113584345	ENSEEEP00000003439	ENSEEEP00000002811	Cullin 5a; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.559
LOC113584365	LOC113591897	ENSEEEP00000003439	ENSEEEP00000035758	Cullin 5a; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.559