STRINGSTRING
pold4 pold4 actb actb LOC113571395 LOC113571395 usp40 usp40 LOC113569548 LOC113569548 rpa1 rpa1 LOC113567680 LOC113567680 LOC113573440 LOC113573440 polr2l polr2l ddb1 ddb1 pold1 pold1 actr8 actr8 rfc4 rfc4 ercc6 ercc6 ENSEEEP00000004035 ENSEEEP00000004035 LOC113570352 LOC113570352 cetn3 cetn3 ino80e ino80e cops3 cops3 Nfatc2ip Nfatc2ip pold3 pold3 LOC113569258 LOC113569258 ENSEEEP00000006834 ENSEEEP00000006834 polk polk Polk Polk lig3 lig3 polr2j polr2j rps27a rps27a rfc2 rfc2 nfrkb nfrkb chd1l chd1l LOC113585486 LOC113585486 rpap3 rpap3 ENSEEEP00000011546 ENSEEEP00000011546 ENSEEEP00000012815 ENSEEEP00000012815 LOC113572193 LOC113572193 rfc1 rfc1 ube2n ube2n LOC113580594 LOC113580594 LOC113585037 LOC113585037 ENSEEEP00000017158 ENSEEEP00000017158 LOC113577166 LOC113577166 kctd2 kctd2 gtf2h4 gtf2h4 uvssa uvssa ENSEEEP00000017941 ENSEEEP00000017941 Pole Pole ENSEEEP00000017953 ENSEEEP00000017953 ruvbl1 ruvbl1 ENSEEEP00000018543 ENSEEEP00000018543 aqr aqr LOC113585072 LOC113585072 cops5 cops5 ppp1r42 ppp1r42 rfc5 rfc5 ENSEEEP00000020550 ENSEEEP00000020550 LOC113571019 LOC113571019 LOC113577820 LOC113577820 ercc4 ercc4 rad23b rad23b ube2v2 ube2v2 ercc3 ercc3 sumo1 sumo1 ddb2 ddb2 rfc3 rfc3 cops4 cops4 LOC113582318 LOC113582318 tceanc2 tceanc2 LOC113578458 LOC113578458 ercc8 ercc8 rpa3 rpa3 usp45 usp45 cul4a cul4a cops7a cops7a YY1 YY1 polr2h polr2h parp2 parp2 Ercc5 Ercc5 ENSEEEP00000027215 ENSEEEP00000027215 ino80 ino80 cdk7 cdk7 pcna pcna nrde2 nrde2 LOC113588922 LOC113588922 LOC113577231 LOC113577231 gtf2h5 gtf2h5 ENSEEEP00000028691 ENSEEEP00000028691 Tcea2 Tcea2 actr5 actr5 parp1 parp1 xrcc1 xrcc1 LOC113574541 LOC113574541 pole4 pole4 cul4b cul4b lig1 lig1 ENSEEEP00000031728 ENSEEEP00000031728 polr2i polr2i pole3 pole3 LOC113572424 LOC113572424 polr2f polr2f bivm bivm polr2b polr2b cops2 cops2 gps1 gps1 LOC113576645 LOC113576645 polr2c polr2c ino80b ino80b polr2a polr2a gtf2h2c gtf2h2c ZNF830 ZNF830 ENSEEEP00000037071 ENSEEEP00000037071 xpa xpa gtf2h1 gtf2h1 TCEANC TCEANC rnf111 rnf111 LOC113580904 LOC113580904 pold2 pold2 ercc1 ercc1 polr2d polr2d LOC113578639 LOC113578639 LOC113574037 LOC113574037 COPS6 COPS6 LOC113574085 LOC113574085 ino80c ino80c sumo2 sumo2 rpa2 rpa2 LOC113584157 LOC113584157 xpc xpc SUMO3 SUMO3 xab2 xab2 usp7 usp7 cops8 cops8 polr2k polr2k ccnh ccnh polr2g polr2g kxd1 kxd1 LOC113582774 LOC113582774 POLR2E POLR2E uba52 uba52 LOC113577499 LOC113577499 mnat1 mnat1 rbx1 rbx1 LOC113583736 LOC113583736 gtf2h3 gtf2h3 mcrs1 mcrs1 ppie ppie prpf19 prpf19 ENSEEEP00000051173 ENSEEEP00000051173 parp3 parp3 ercc2 ercc2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pold4Uncharacterized protein. (109 aa)
actbUncharacterized protein. (375 aa)
LOC113571395Polymerase (DNA directed), epsilon 2. (527 aa)
usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1196 aa)
LOC113569548TFIIS central domain-containing protein. (153 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (624 aa)
LOC113567680Small ubiquitin-related modifier. (109 aa)
LOC113573440UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
polr2lUncharacterized protein. (67 aa)
ddb1CPSF_A domain-containing protein. (1147 aa)
pold1DNA polymerase. (1061 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (636 aa)
rfc4AAA domain-containing protein. (357 aa)
ercc6Excision repair cross-complementation group 6. (1398 aa)
ENSEEEP00000004035Dpoe2NT domain-containing protein. (82 aa)
LOC113570352Si:ch73-290k24.6. (332 aa)
cetn3Uncharacterized protein. (167 aa)
ino80eUncharacterized protein. (386 aa)
cops3PCI domain-containing protein. (423 aa)
Nfatc2ipRad60-SLD domain-containing protein. (136 aa)
pold3Uncharacterized protein. (462 aa)
LOC113569258General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (462 aa)
ENSEEEP00000006834Uncharacterized protein. (110 aa)
polkPolymerase (DNA directed) kappa. (413 aa)
PolkUncharacterized protein. (403 aa)
lig3DNA ligase. (1009 aa)
polr2jRNA_pol_L_2 domain-containing protein. (117 aa)
rps27aUbiquitin-like domain-containing protein. (156 aa)
rfc2AAA domain-containing protein. (369 aa)
nfrkbNuclear factor related to kappaB binding protein. (1268 aa)
chd1lUncharacterized protein. (1021 aa)
LOC113585486PHD finger protein 3. (1566 aa)
rpap3RNA polymerase II associated protein 3. (641 aa)
ENSEEEP00000011546Uncharacterized protein. (890 aa)
ENSEEEP00000012815annotation not available (105 aa)
LOC113572193Uncharacterized protein. (663 aa)
rfc1Replication factor C subunit 1. (1124 aa)
ube2nUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
LOC113580594ISY1 splicing factor homolog. (278 aa)
LOC113585037RAD23 homolog A, nucleotide excision repair protein a. (362 aa)
ENSEEEP00000017158Von Willebrand factor A domain containing 5B2. (1047 aa)
LOC113577166Uncharacterized protein. (172 aa)
kctd2BTB domain-containing protein. (266 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (473 aa)
uvssaUncharacterized protein. (736 aa)
ENSEEEP00000017941DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (304 aa)
PoleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (708 aa)
ENSEEEP00000017953DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (368 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
ENSEEEP00000018543Methionine sulfoxide reductase B1b. (259 aa)
aqrAquarius intron-binding spliceosomal factor. (1417 aa)
LOC113585072Protein inhibitor of activated STAT, 1b. (684 aa)
cops5MPN domain-containing protein. (336 aa)
ppp1r42Protein phosphatase 1, regulatory subunit 42. (322 aa)
rfc5AAA domain-containing protein. (363 aa)
ENSEEEP00000020550Transcription elongation factor A (SII), 1. (86 aa)
LOC113571019Ring finger protein 165b. (349 aa)
LOC113577820RAD23 homolog A, nucleotide excision repair protein b. (411 aa)
ercc4ERCC4 domain-containing protein. (899 aa)
rad23bUncharacterized protein. (409 aa)
ube2v2UBIQUITIN_CONJUGAT_2 domain-containing protein. (158 aa)
ercc3Uncharacterized protein. (823 aa)
sumo1Small ubiquitin-related modifier. (121 aa)
ddb2WD_REPEATS_REGION domain-containing protein. (485 aa)
rfc3AAA domain-containing protein. (356 aa)
cops4PCI domain-containing protein. (410 aa)
LOC113582318INO80 complex subunit Da. (652 aa)
tceanc2Uncharacterized protein. (211 aa)
LOC113578458UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (173 aa)
ercc8WD_REPEATS_REGION domain-containing protein. (400 aa)
rpa3Uncharacterized protein. (122 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (799 aa)
cul4aCullin 4A; Belongs to the cullin family. (782 aa)
cops7aPCI domain-containing protein. (268 aa)
YY1Uncharacterized protein. (430 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
parp2Poly [ADP-ribose] polymerase. (572 aa)
Ercc5XPGI domain-containing protein. (396 aa)
ENSEEEP00000027215XPGN domain-containing protein. (302 aa)
ino80Uncharacterized protein. (1128 aa)
cdk7Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (345 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1019 aa)
LOC113588922E1A binding protein p300 b. (1825 aa)
LOC113577231RPA_C domain-containing protein. (232 aa)
gtf2h5Uncharacterized protein. (71 aa)
ENSEEEP00000028691Uncharacterized protein. (61 aa)
Tcea2Transcription elongation factor A (SII), 2. (306 aa)
actr5Uncharacterized protein; Belongs to the actin family. (646 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1012 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (539 aa)
LOC113574541SCY domain-containing protein. (114 aa)
pole4CBFD_NFYB_HMF domain-containing protein. (127 aa)
cul4bCULLIN_2 domain-containing protein; Belongs to the cullin family. (862 aa)
lig1DNA ligase. (941 aa)
ENSEEEP00000031728Uncharacterized protein. (384 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
pole3CBFD_NFYB_HMF domain-containing protein. (149 aa)
LOC113572424Ubiquitin-conjugating enzyme E2 variant 1. (176 aa)
polr2fUncharacterized protein. (127 aa)
bivmUncharacterized protein. (505 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1187 aa)
cops2PCI domain-containing protein. (453 aa)
gps1PCI domain-containing protein. (533 aa)
LOC113576645Uncharacterized protein. (363 aa)
polr2cRPOLD domain-containing protein. (275 aa)
ino80bPAPA-1 domain-containing protein. (333 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
gtf2h2cGeneral transcription factor IIH subunit. (398 aa)
ZNF830Zinc finger protein 830. (334 aa)
ENSEEEP00000037071Uncharacterized protein. (417 aa)
xpaXeroderma pigmentosum, complementation group A. (519 aa)
gtf2h1Uncharacterized protein. (607 aa)
TCEANCTranscription elongation factor A N-terminal and central domain containing. (279 aa)
rnf111Ring finger protein 111. (857 aa)
LOC113580904Uncharacterized protein. (378 aa)
pold2Uncharacterized protein. (469 aa)
ercc1Uncharacterized protein. (346 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (143 aa)
LOC113578639Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (528 aa)
LOC113574037Uncharacterized protein. (877 aa)
COPS6MPN domain-containing protein. (328 aa)
LOC113574085Protein inhibitor of activated STAT, 1a. (631 aa)
ino80cYL1_C domain-containing protein. (211 aa)
sumo2Small ubiquitin-related modifier. (111 aa)
rpa2RPA_C domain-containing protein. (280 aa)
LOC113584157Ubiquitin-like domain-containing protein. (77 aa)
xpcUncharacterized protein. (868 aa)
SUMO3Small ubiquitin-related modifier. (113 aa)
xab2XPA binding protein 2. (859 aa)
usp7Uncharacterized protein; Belongs to the peptidase C19 family. (1103 aa)
cops8PCI domain-containing protein. (191 aa)
polr2kUncharacterized protein. (58 aa)
ccnhCYCLIN domain-containing protein; Belongs to the cyclin family. (321 aa)
polr2gS1 domain-containing protein. (172 aa)
kxd1KxDL domain-containing protein. (183 aa)
LOC113582774Small ubiquitin-related modifier. (94 aa)
POLR2EUncharacterized protein. (210 aa)
uba52Ubiquitin-like domain-containing protein. (128 aa)
LOC113577499Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (549 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (135 aa)
LOC113583736UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (246 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (293 aa)
mcrs1FHA domain-containing protein. (475 aa)
ppieUncharacterized protein. (361 aa)
prpf19Pre-mRNA processing factor 19. (499 aa)
ENSEEEP00000051173TCF3 (E2A) fusion partner. (165 aa)
parp3Poly [ADP-ribose] polymerase. (527 aa)
ercc2Helicase ATP-binding domain-containing protein. (760 aa)
Your Current Organism:
Electrophorus electricus
NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish
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