52 items (Electrophorus electricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113575325	Cytohesin 1a. (398 aa)
	rab33b	Uncharacterized protein. (239 aa)
	COG5	Component of oligomeric golgi complex 5. (736 aa)
	ENSEEEP00000003916	Uncharacterized protein. (74 aa)
	arf1	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	LOC113588777	N-ethylmaleimide-sensitive factor a. (730 aa)
	gosr2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (214 aa)
	cog2	Uncharacterized protein. (735 aa)
	LOC113580096	Uncharacterized protein. (405 aa)
	LOC113573783	N-ethylmaleimide-sensitive factor attachment protein, alpha a. (306 aa)
	snap29	Uncharacterized protein. (263 aa)
	LOC113577647	Uncharacterized protein. (417 aa)
	rgp1	Uncharacterized protein. (386 aa)
	LOC113574754	Uncharacterized protein. (316 aa)
	vipas39	Vps16_C domain-containing protein. (489 aa)
	LOC113572637	Uncharacterized protein. (295 aa)
	RIC1	RIC1 homolog, RAB6A GEF complex partner 1. (1357 aa)
	cyth3	Cytohesin 3a. (405 aa)
	BET1L	t-SNARE coiled-coil homology domain-containing protein. (110 aa)
	cog7	Uncharacterized protein. (767 aa)
	LOC113591566	Uncharacterized protein. (295 aa)
	LOC113585738	Alkaline phosphatase. (529 aa)
	LOC113585746	Uncharacterized protein; Belongs to the alkaline phosphatase family. (535 aa)
	alpl	Alkaline phosphatase. (525 aa)
	LOC113588333	Uncharacterized protein. (244 aa)
	vps45	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (577 aa)
	ENSEEEP00000032118	Uncharacterized protein. (237 aa)
	ENSEEEP00000032120	Uncharacterized protein. (172 aa)
	LOC113575147	Uncharacterized protein. (262 aa)
	cog1	Uncharacterized protein. (973 aa)
	stx5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (328 aa)
	cog8	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family. (619 aa)
	cog4	Cog4 domain-containing protein. (787 aa)
	LOC113584168	Uncharacterized protein. (769 aa)
	fbxo8	SEC7 domain-containing protein. (321 aa)
	stx16	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	rab30	Uncharacterized protein. (204 aa)
	cog3	Uncharacterized protein. (829 aa)
	LOC113590820	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (342 aa)
	vti1a	t-SNARE coiled-coil homology domain-containing protein. (211 aa)
	cog6	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (657 aa)
	LOC113572881	Uncharacterized protein. (403 aa)
	napa	N-ethylmaleimide-sensitive factor attachment protein, alpha b. (317 aa)
	LOC113583696	Uncharacterized protein; Belongs to the synaptobrevin family. (207 aa)
	smim7	Uncharacterized protein. (77 aa)
	LOC113581943	N-ethylmaleimide-sensitive factor attachment protein, gamma b. (307 aa)
	LOC113571409	Cytohesin 1a. (410 aa)
	golga5	Uncharacterized protein. (763 aa)
	trip11	Thyroid hormone receptor interactor 11. (1978 aa)
	LOC113588680	Uncharacterized protein; Belongs to the synaptobrevin family. (210 aa)
	LOC113573023	Cytohesin 2. (411 aa)
	gosr1	Uncharacterized protein. (252 aa)

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BET1L	COG5	ENSEEEP00000022850	ENSEEEP00000002524	t-SNARE coiled-coil homology domain-containing protein.	Component of oligomeric golgi complex 5.	0.693
BET1L	LOC113572637	ENSEEEP00000022850	ENSEEEP00000020132	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.739
BET1L	LOC113573783	ENSEEEP00000022850	ENSEEEP00000009502	t-SNARE coiled-coil homology domain-containing protein.	N-ethylmaleimide-sensitive factor attachment protein, alpha a.	0.739
BET1L	LOC113574754	ENSEEEP00000022850	ENSEEEP00000015462	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.702
BET1L	LOC113581943	ENSEEEP00000022850	ENSEEEP00000048231	t-SNARE coiled-coil homology domain-containing protein.	N-ethylmaleimide-sensitive factor attachment protein, gamma b.	0.702
BET1L	LOC113583696	ENSEEEP00000022850	ENSEEEP00000045437	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.961
BET1L	LOC113584168	ENSEEEP00000022850	ENSEEEP00000035216	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.777
BET1L	LOC113588333	ENSEEEP00000022850	ENSEEEP00000029326	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.497
BET1L	LOC113588680	ENSEEEP00000022850	ENSEEEP00000049814	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.961
BET1L	LOC113588777	ENSEEEP00000022850	ENSEEEP00000004999	t-SNARE coiled-coil homology domain-containing protein.	N-ethylmaleimide-sensitive factor a.	0.777
BET1L	LOC113590820	ENSEEEP00000022850	ENSEEEP00000039739	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.996
BET1L	LOC113591566	ENSEEEP00000022850	ENSEEEP00000025800	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.739
BET1L	arf1	ENSEEEP00000022850	ENSEEEP00000004962	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.432
BET1L	cog1	ENSEEEP00000022850	ENSEEEP00000034597	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.699
BET1L	cog2	ENSEEEP00000022850	ENSEEEP00000007479	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.787
BET1L	cog3	ENSEEEP00000022850	ENSEEEP00000039645	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.804
BET1L	cog4	ENSEEEP00000022850	ENSEEEP00000035032	t-SNARE coiled-coil homology domain-containing protein.	Cog4 domain-containing protein.	0.732
BET1L	cog6	ENSEEEP00000022850	ENSEEEP00000041582	t-SNARE coiled-coil homology domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.762
BET1L	cog7	ENSEEEP00000022850	ENSEEEP00000023643	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.670
BET1L	cog8	ENSEEEP00000022850	ENSEEEP00000034756	t-SNARE coiled-coil homology domain-containing protein.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.758