(15 nodes) 90S preribosome, and Positive regulation of rRNA processing network (Esox lucius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bms1	BMS1 ribosome biogenesis factor. (1226 aa)
	LOC105019722	PWP2 small subunit processome component. (919 aa)
	rrp9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (481 aa)
	utp6	UTP6 small subunit processome component. (594 aa)
	ENSELUP00000006512	Transducin (beta)-like 3. (630 aa)
	noc4l	Nucleolar complex associated 4 homolog. (532 aa)
	nol6	Nucleolar protein 6. (1148 aa)
	wdr43	WD repeat domain 43. (675 aa)
	wdr36	WD repeat domain 36. (893 aa)
	utp15	UTP15 small subunit processome component. (525 aa)
	wdr3	WD repeat domain 3. (941 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (873 aa)
	wdr75	WD repeat domain 75. (836 aa)
	utp4	UTP4 small subunit processome component. (684 aa)
	UTP18	UTP18 small subunit processome component. (521 aa)

Your Current Organism:

Esox lucius

NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSELUP00000006512	LOC105019722	ENSELUP00000006512	ENSELUP00000000272	Transducin (beta)-like 3.	PWP2 small subunit processome component.	0.999
ENSELUP00000006512	UTP18	ENSELUP00000006512	ENSELUP00000036377	Transducin (beta)-like 3.	UTP18 small subunit processome component.	0.999
ENSELUP00000006512	bms1	ENSELUP00000006512	ENSELUP00000000146	Transducin (beta)-like 3.	BMS1 ribosome biogenesis factor.	0.999
ENSELUP00000006512	noc4l	ENSELUP00000006512	ENSELUP00000009950	Transducin (beta)-like 3.	Nucleolar complex associated 4 homolog.	0.998
ENSELUP00000006512	nol6	ENSELUP00000006512	ENSELUP00000018293	Transducin (beta)-like 3.	Nucleolar protein 6.	0.999
ENSELUP00000006512	nop14	ENSELUP00000006512	ENSELUP00000030760	Transducin (beta)-like 3.	NOP14 nucleolar protein homolog (yeast).	0.996
ENSELUP00000006512	rrp9	ENSELUP00000006512	ENSELUP00000001245	Transducin (beta)-like 3.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.998
ENSELUP00000006512	utp15	ENSELUP00000006512	ENSELUP00000027867	Transducin (beta)-like 3.	UTP15 small subunit processome component.	0.998
ENSELUP00000006512	utp4	ENSELUP00000006512	ENSELUP00000035572	Transducin (beta)-like 3.	UTP4 small subunit processome component.	0.999
ENSELUP00000006512	utp6	ENSELUP00000006512	ENSELUP00000005614	Transducin (beta)-like 3.	UTP6 small subunit processome component.	0.999
ENSELUP00000006512	wdr3	ENSELUP00000006512	ENSELUP00000029122	Transducin (beta)-like 3.	WD repeat domain 3.	0.999
ENSELUP00000006512	wdr36	ENSELUP00000006512	ENSELUP00000027650	Transducin (beta)-like 3.	WD repeat domain 36.	0.999
ENSELUP00000006512	wdr43	ENSELUP00000006512	ENSELUP00000020598	Transducin (beta)-like 3.	WD repeat domain 43.	0.998
ENSELUP00000006512	wdr75	ENSELUP00000006512	ENSELUP00000035117	Transducin (beta)-like 3.	WD repeat domain 75.	0.998
LOC105019722	ENSELUP00000006512	ENSELUP00000000272	ENSELUP00000006512	PWP2 small subunit processome component.	Transducin (beta)-like 3.	0.999
LOC105019722	UTP18	ENSELUP00000000272	ENSELUP00000036377	PWP2 small subunit processome component.	UTP18 small subunit processome component.	0.999
LOC105019722	bms1	ENSELUP00000000272	ENSELUP00000000146	PWP2 small subunit processome component.	BMS1 ribosome biogenesis factor.	0.999
LOC105019722	noc4l	ENSELUP00000000272	ENSELUP00000009950	PWP2 small subunit processome component.	Nucleolar complex associated 4 homolog.	0.999
LOC105019722	nol6	ENSELUP00000000272	ENSELUP00000018293	PWP2 small subunit processome component.	Nucleolar protein 6.	0.999
LOC105019722	nop14	ENSELUP00000000272	ENSELUP00000030760	PWP2 small subunit processome component.	NOP14 nucleolar protein homolog (yeast).	0.999