39 items (Esox lucius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSELUP00000000541	Si:dkey-61l1.4. (899 aa)
	ENSELUP00000002005	Fibrillar collagen NC1 domain-containing protein. (950 aa)
	ENSELUP00000002854	Uncharacterized protein. (555 aa)
	col8a2	Collagen, type VIII, alpha 2. (687 aa)
	ENSELUP00000003460	Uncharacterized protein. (339 aa)
	c1qtnf7	C1q and TNF related 7. (300 aa)
	MARCO	Macrophage receptor with collagenous structure. (428 aa)
	LOC105015295	Uncharacterized protein. (390 aa)
	ENSELUP00000007046	Uncharacterized protein. (1136 aa)
	LOC105026384	Si:dkey-21p1.3. (897 aa)
	LOC105007879	EMI domain-containing protein. (407 aa)
	LOC105019248	Zgc:113232. (654 aa)
	ENSELUP00000009996	Uncharacterized protein. (160 aa)
	LOC105005630	C1q domain-containing protein. (248 aa)
	LOC105005629	Complement component 1, q subcomponent, C chain. (243 aa)
	ENSELUP00000011085	Collagen, type V, alpha 3b. (1400 aa)
	Col19a1	LAM_G_DOMAIN domain-containing protein. (452 aa)
	colec11	Collectin sub-family member 11. (284 aa)
	emid1	EMI domain-containing protein. (488 aa)
	LOC105019599	C1q and TNF related 9. (340 aa)
	ENSELUP00000014877	Si:ch211-106n13.3. (702 aa)
	LOC105030330	Uncharacterized protein. (448 aa)
	ENSELUP00000017223	Uncharacterized protein. (404 aa)
	Col5a2	Collagen, type V, alpha 2a. (1173 aa)
	scara5	Scavenger receptor class A member 5; Ferritin receptor that mediates non-transferrin-dependent delivery of iron. Mediates cellular uptake of ferritin-bound iron by stimulating ferritin endocytosis from the cell surface with consequent iron delivery within the cell. Delivery of iron to cells by ferritin is required for the development of specific cell types, suggesting the existence of cell type-specific mechanisms of iron traffic in organogenesis, which alternatively utilize transferrin or non- transferrin iron delivery pathways. (501 aa)
	scara3	Scavenger receptor class A, member 3. (603 aa)
	LOC105019481	Endostatin domain-containing protein. (1045 aa)
	colec10	Collectin subfamily member 10. (273 aa)
	colec12	C-type lectin domain-containing protein. (767 aa)
	ENSELUP00000031447	Uncharacterized protein. (478 aa)
	ENSELUP00000031665	Uncharacterized protein. (321 aa)
	LOC105005628	Complement component 1, q subcomponent, A chain. (251 aa)
	LOC105011114	EMI domain-containing protein. (430 aa)
	ENSELUP00000033572	Uncharacterized protein. (389 aa)
	LOC105021885	Collagen, type XXVIII, alpha 1b. (911 aa)
	ENSELUP00000036033	Uncharacterized protein. (637 aa)
	col8a1	C1q domain-containing protein. (753 aa)
	LOC105021406	Zmp:0000000760. (701 aa)
	c1qtnf2	C1q and TNF related 2. (303 aa)

Your Current Organism:

Esox lucius

NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Col19a1	ENSELUP00000003460	ENSELUP00000012416	ENSELUP00000003460	LAM_G_DOMAIN domain-containing protein.	Uncharacterized protein.	0.721
Col19a1	ENSELUP00000031665	ENSELUP00000012416	ENSELUP00000031665	LAM_G_DOMAIN domain-containing protein.	Uncharacterized protein.	0.520
Col19a1	LOC105005629	ENSELUP00000012416	ENSELUP00000010997	LAM_G_DOMAIN domain-containing protein.	Complement component 1, q subcomponent, C chain.	0.458
Col19a1	LOC105005630	ENSELUP00000012416	ENSELUP00000010983	LAM_G_DOMAIN domain-containing protein.	C1q domain-containing protein.	0.469
Col5a2	LOC105005629	ENSELUP00000017725	ENSELUP00000010997	Collagen, type V, alpha 2a.	Complement component 1, q subcomponent, C chain.	0.462
ENSELUP00000000541	LOC105005629	ENSELUP00000000541	ENSELUP00000010997	Si:dkey-61l1.4.	Complement component 1, q subcomponent, C chain.	0.626
ENSELUP00000000541	LOC105005630	ENSELUP00000000541	ENSELUP00000010983	Si:dkey-61l1.4.	C1q domain-containing protein.	0.479
ENSELUP00000000541	colec11	ENSELUP00000000541	ENSELUP00000013095	Si:dkey-61l1.4.	Collectin sub-family member 11.	0.418
ENSELUP00000002005	LOC105005629	ENSELUP00000002005	ENSELUP00000010997	Fibrillar collagen NC1 domain-containing protein.	Complement component 1, q subcomponent, C chain.	0.613
ENSELUP00000002005	colec10	ENSELUP00000002005	ENSELUP00000025593	Fibrillar collagen NC1 domain-containing protein.	Collectin subfamily member 10.	0.518
ENSELUP00000002005	colec11	ENSELUP00000002005	ENSELUP00000013095	Fibrillar collagen NC1 domain-containing protein.	Collectin sub-family member 11.	0.409
ENSELUP00000002854	ENSELUP00000031665	ENSELUP00000002854	ENSELUP00000031665	Uncharacterized protein.	Uncharacterized protein.	0.536
ENSELUP00000002854	LOC105005628	ENSELUP00000002854	ENSELUP00000033263	Uncharacterized protein.	Complement component 1, q subcomponent, A chain.	0.424
ENSELUP00000002854	LOC105005629	ENSELUP00000002854	ENSELUP00000010997	Uncharacterized protein.	Complement component 1, q subcomponent, C chain.	0.584
ENSELUP00000002854	LOC105005630	ENSELUP00000002854	ENSELUP00000010983	Uncharacterized protein.	C1q domain-containing protein.	0.488
ENSELUP00000002854	c1qtnf2	ENSELUP00000002854	ENSELUP00000041663	Uncharacterized protein.	C1q and TNF related 2.	0.521
ENSELUP00000002854	colec10	ENSELUP00000002854	ENSELUP00000025593	Uncharacterized protein.	Collectin subfamily member 10.	0.520
ENSELUP00000002854	colec12	ENSELUP00000002854	ENSELUP00000031235	Uncharacterized protein.	C-type lectin domain-containing protein.	0.422
ENSELUP00000002854	scara3	ENSELUP00000002854	ENSELUP00000024226	Uncharacterized protein.	Scavenger receptor class A, member 3.	0.403
ENSELUP00000002854	scara5	ENSELUP00000002854	ENSELUP00000024046	Uncharacterized protein.	Scavenger receptor class A member 5; Ferritin receptor that mediates non-transferrin-dependent delivery of iron. Mediates cellular uptake of ferritin-bound iron by stimulating ferritin endocytosis from the cell surface with consequent iron delivery within the cell. Delivery of iron to cells by ferritin is required for the development of specific cell types, suggesting the existence of cell type-specific mechanisms of iron traffic in organogenesis, which alternatively utilize transferrin or non- transferrin iron delivery pathways.	0.456