(30 nodes) Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) network (Esox lucius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl28	Ribosomal protein L28. (137 aa)
	rps16	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	rpl4	Ribosomal protein L4. (382 aa)
	rpl27a	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	LOC105024418	60S ribosomal protein L26. (145 aa)
	rpl35a	Ribosomal protein L35a. (131 aa)
	Rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (123 aa)
	rpl34	Ribosomal protein L34. (117 aa)
	rps8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (93 aa)
	ENSELUP00000016782	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	rpl23a	Ribosomal protein L23a. (196 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	rps11	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (158 aa)
	rps28	Ribosomal protein S28. (75 aa)
	rps19	Ribosomal protein S19. (152 aa)
	rpl7a	Ribosomal protein L7a. (266 aa)
	rps24	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
	rpl17	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (186 aa)
	rpl6	Ribosomal protein L6. (259 aa)
	rpl36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (156 aa)
	rpl37a	Ribosomal protein L37a. (68 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (344 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	rpl13a	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
	rps21	Ribosomal protein S21. (183 aa)
	rps15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
	rps10	S10_plectin domain-containing protein. (172 aa)
	rpl24	Ribosomal protein L24. (151 aa)
	rpl8	Ribosomal protein L8. (286 aa)

Your Current Organism:

Esox lucius

NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSELUP00000016782	LOC105024418	ENSELUP00000016782	ENSELUP00000004191	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L26.	0.999
ENSELUP00000016782	Rps26	ENSELUP00000016782	ENSELUP00000007710	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
ENSELUP00000016782	rpl12	ENSELUP00000016782	ENSELUP00000020757	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999
ENSELUP00000016782	rpl13a	ENSELUP00000016782	ENSELUP00000035554	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
ENSELUP00000016782	rpl17	ENSELUP00000016782	ENSELUP00000025726	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
ENSELUP00000016782	rpl21	ENSELUP00000016782	ENSELUP00000035206	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L21.	0.999
ENSELUP00000016782	rpl23a	ENSELUP00000016782	ENSELUP00000018950	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L23a.	0.999
ENSELUP00000016782	rpl24	ENSELUP00000016782	ENSELUP00000040627	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L24.	0.999
ENSELUP00000016782	rpl27a	ENSELUP00000016782	ENSELUP00000002942	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
ENSELUP00000016782	rpl28	ENSELUP00000016782	ENSELUP00000000106	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L28.	0.999
ENSELUP00000016782	rpl29	ENSELUP00000016782	ENSELUP00000015649	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
ENSELUP00000016782	rpl34	ENSELUP00000016782	ENSELUP00000010355	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L34.	0.999
ENSELUP00000016782	rpl35a	ENSELUP00000016782	ENSELUP00000005746	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L35a.	0.999
ENSELUP00000016782	rpl36	ENSELUP00000016782	ENSELUP00000033035	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
ENSELUP00000016782	rpl37a	ENSELUP00000016782	ENSELUP00000034166	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L37a.	0.999
ENSELUP00000016782	rpl4	ENSELUP00000016782	ENSELUP00000001374	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L4.	0.999
ENSELUP00000016782	rpl6	ENSELUP00000016782	ENSELUP00000031719	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L6.	0.999
ENSELUP00000016782	rpl7a	ENSELUP00000016782	ENSELUP00000024228	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L7a.	0.999
ENSELUP00000016782	rpl8	ENSELUP00000016782	ENSELUP00000042382	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L8.	0.999
ENSELUP00000016782	rps10	ENSELUP00000016782	ENSELUP00000040179	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	S10_plectin domain-containing protein.	0.999