(13 nodes) CCR4-NOT complex network (Esox lucius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cnot10	CCR4-NOT transcription complex, subunit 10. (787 aa)
	LOC105018606	CCR4-NOT transcription complex, subunit 2. (560 aa)
	LOC105026542	CCR4-NOT transcription complex, subunit 7. (286 aa)
	cnot8	CCR4-NOT transcription complex, subunit 8. (285 aa)
	LOC105005612	CCR4-NOT transcription complex, subunit 4b. (896 aa)
	CNOT2	CCR4-NOT transcription complex subunit 2. (533 aa)
	CNOT9	CCR4-NOT transcription complex subunit 9. (297 aa)
	cnot3	CCR4-NOT transcription complex, subunit 3a. (958 aa)
	LOC105022524	CCR4-NOT transcription complex subunit 9. (305 aa)
	LOC105025878	CCR4-NOT transcription complex, subunit 3b. (933 aa)
	cnot4	CCR4-NOT transcription complex, subunit 4a. (863 aa)
	cnot11	CCR4-NOT transcription complex, subunit 11. (445 aa)
	cnot1	CCR4-NOT transcription complex, subunit 1. (2408 aa)

Your Current Organism:

Esox lucius

NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT2	CNOT9	ENSELUP00000011694	ENSELUP00000013132	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 9.	0.955
CNOT2	LOC105005612	ENSELUP00000011694	ENSELUP00000011098	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 4b.	0.944
CNOT2	LOC105018606	ENSELUP00000011694	ENSELUP00000006390	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 2.	0.900
CNOT2	LOC105022524	ENSELUP00000011694	ENSELUP00000016649	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 9.	0.955
CNOT2	LOC105025878	ENSELUP00000011694	ENSELUP00000023384	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 3b.	0.957
CNOT2	LOC105026542	ENSELUP00000011694	ENSELUP00000009302	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 7.	0.947
CNOT2	cnot1	ENSELUP00000011694	ENSELUP00000035211	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 1.	0.987
CNOT2	cnot10	ENSELUP00000011694	ENSELUP00000003185	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 10.	0.956
CNOT2	cnot11	ENSELUP00000011694	ENSELUP00000031520	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 11.	0.954
CNOT2	cnot3	ENSELUP00000011694	ENSELUP00000014735	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 3a.	0.957
CNOT2	cnot4	ENSELUP00000011694	ENSELUP00000031259	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 4a.	0.944
CNOT2	cnot8	ENSELUP00000011694	ENSELUP00000010397	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 8.	0.947
CNOT9	CNOT2	ENSELUP00000013132	ENSELUP00000011694	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex subunit 2.	0.955
CNOT9	LOC105005612	ENSELUP00000013132	ENSELUP00000011098	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex, subunit 4b.	0.956
CNOT9	LOC105018606	ENSELUP00000013132	ENSELUP00000006390	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex, subunit 2.	0.955
CNOT9	LOC105022524	ENSELUP00000013132	ENSELUP00000016649	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex subunit 9.	0.900
CNOT9	LOC105025878	ENSELUP00000013132	ENSELUP00000023384	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex, subunit 3b.	0.957
CNOT9	LOC105026542	ENSELUP00000013132	ENSELUP00000009302	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex, subunit 7.	0.955
CNOT9	cnot1	ENSELUP00000013132	ENSELUP00000035211	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex, subunit 1.	0.986
CNOT9	cnot10	ENSELUP00000013132	ENSELUP00000003185	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex, subunit 10.	0.920