(10 nodes) COMM domain network (Esox lucius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	commd7	COMM domain containing 7. (204 aa)
	LOC105008267	COMM domain containing 4. (199 aa)
	ccdc22	Coiled-coil domain containing 22. (629 aa)
	commd3	COMM domain-containing protein 3. (196 aa)
	commd2	COMM domain containing 2. (199 aa)
	commd1	Copper metabolism (Murr1) domain containing 1. (188 aa)
	LOC105027376	COMM domain containing 5. (216 aa)
	commd8	COMM domain-containing protein. (176 aa)
	commd10	COMM domain-containing protein 10. (198 aa)
	commd9	COMM domain-containing protein 9. (197 aa)

Your Current Organism:

Esox lucius

NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC105008267	LOC105027376	ENSELUP00000002062	ENSELUP00000013494	COMM domain containing 4.	COMM domain containing 5.	0.939
LOC105008267	ccdc22	ENSELUP00000002062	ENSELUP00000005728	COMM domain containing 4.	Coiled-coil domain containing 22.	0.952
LOC105008267	commd1	ENSELUP00000002062	ENSELUP00000012288	COMM domain containing 4.	Copper metabolism (Murr1) domain containing 1.	0.933
LOC105008267	commd10	ENSELUP00000002062	ENSELUP00000019656	COMM domain containing 4.	COMM domain-containing protein 10.	0.917
LOC105008267	commd2	ENSELUP00000002062	ENSELUP00000010791	COMM domain containing 4.	COMM domain containing 2.	0.963
LOC105008267	commd3	ENSELUP00000002062	ENSELUP00000010476	COMM domain containing 4.	COMM domain-containing protein 3.	0.887
LOC105008267	commd7	ENSELUP00000002062	ENSELUP00000001439	COMM domain containing 4.	COMM domain containing 7.	0.888
LOC105008267	commd8	ENSELUP00000002062	ENSELUP00000014340	COMM domain containing 4.	COMM domain-containing protein.	0.919
LOC105008267	commd9	ENSELUP00000002062	ENSELUP00000041792	COMM domain containing 4.	COMM domain-containing protein 9.	0.938
LOC105027376	LOC105008267	ENSELUP00000013494	ENSELUP00000002062	COMM domain containing 5.	COMM domain containing 4.	0.939
LOC105027376	ccdc22	ENSELUP00000013494	ENSELUP00000005728	COMM domain containing 5.	Coiled-coil domain containing 22.	0.932
LOC105027376	commd1	ENSELUP00000013494	ENSELUP00000012288	COMM domain containing 5.	Copper metabolism (Murr1) domain containing 1.	0.931
LOC105027376	commd10	ENSELUP00000013494	ENSELUP00000019656	COMM domain containing 5.	COMM domain-containing protein 10.	0.968
LOC105027376	commd2	ENSELUP00000013494	ENSELUP00000010791	COMM domain containing 5.	COMM domain containing 2.	0.968
LOC105027376	commd3	ENSELUP00000013494	ENSELUP00000010476	COMM domain containing 5.	COMM domain-containing protein 3.	0.849
LOC105027376	commd7	ENSELUP00000013494	ENSELUP00000001439	COMM domain containing 5.	COMM domain containing 7.	0.887
LOC105027376	commd8	ENSELUP00000013494	ENSELUP00000014340	COMM domain containing 5.	COMM domain-containing protein.	0.913
LOC105027376	commd9	ENSELUP00000013494	ENSELUP00000041792	COMM domain containing 5.	COMM domain-containing protein 9.	0.878
ccdc22	LOC105008267	ENSELUP00000005728	ENSELUP00000002062	Coiled-coil domain containing 22.	COMM domain containing 4.	0.952
ccdc22	LOC105027376	ENSELUP00000005728	ENSELUP00000013494	Coiled-coil domain containing 22.	COMM domain containing 5.	0.932