30 items (Esox lucius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tmem41b	Transmembrane protein 41B. (282 aa)
	LOC105025437	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (810 aa)
	Rhog	Ras homolog family member Ga. (153 aa)
	LOC105023804	LIM homeobox 1a. (405 aa)
	LOC105006364	Survival of motor neuron 1, telomeric. (278 aa)
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	ENSELUP00000042732	ANK_REP_REGION domain-containing protein. (174 aa)
	LOC105013164	Netrin 1b. (600 aa)
	e2f8	E2F transcription factor 8. (918 aa)
	LOC105020375	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (869 aa)
	LOC105011880	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins. (923 aa)
	ntn1	Netrin 1a. (603 aa)
	ENSELUP00000006625	Ras homolog gene family, member Gd. (124 aa)
	chodl	Chondrolectin. (306 aa)
	LOC105030962	Netrin 2. (638 aa)
	LOC105006584	Vascular endothelial growth factor Aa; Belongs to the PDGF/VEGF growth factor family. (190 aa)
	e2f7	E2F transcription factor 7. (818 aa)
	sema3a	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (821 aa)
	ppp1r12a	Protein phosphatase 1 regulatory subunit. (1114 aa)
	LOC105031491	Netrin 5. (858 aa)
	CDH2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (914 aa)
	LOC105017828	NK2 homeobox 2b. (264 aa)
	rnf165	Ring finger protein 165a. (349 aa)
	LOC105014090	Ring finger protein 165b. (363 aa)
	Rest	Uncharacterized protein. (1200 aa)
	LOC105015793	NK2 homeobox 2a. (292 aa)
	LOC105012246	Notum pectinacetylesterase 2. (495 aa)
	LOC105017425	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (801 aa)
	ENSELUP00000028140	Uncharacterized protein. (179 aa)
	chst11	Carbohydrate sulfotransferase. (352 aa)

Your Current Organism:

Esox lucius

NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH2	LOC105011880	ENSELUP00000018956	ENSELUP00000000657	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.	0.901
ENSELUP00000006625	Rhog	ENSELUP00000006625	ENSELUP00000034250	Ras homolog gene family, member Gd.	Ras homolog family member Ga.	0.901
LOC105011880	CDH2	ENSELUP00000000657	ENSELUP00000018956	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.901
LOC105020375	cdk5	ENSELUP00000000182	ENSELUP00000041388	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.600
Rhog	ENSELUP00000006625	ENSELUP00000034250	ENSELUP00000006625	Ras homolog family member Ga.	Ras homolog gene family, member Gd.	0.901
cdk5	LOC105020375	ENSELUP00000041388	ENSELUP00000000182	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.600
cdk5	sema3a	ENSELUP00000041388	ENSELUP00000021136	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	0.600
chodl	tmem41b	ENSELUP00000007889	ENSELUP00000030637	Chondrolectin.	Transmembrane protein 41B.	0.560
e2f7	e2f8	ENSELUP00000023342	ENSELUP00000042738	E2F transcription factor 7.	E2F transcription factor 8.	0.659
e2f8	e2f7	ENSELUP00000042738	ENSELUP00000023342	E2F transcription factor 8.	E2F transcription factor 7.	0.659
sema3a	cdk5	ENSELUP00000021136	ENSELUP00000041388	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.600
tmem41b	chodl	ENSELUP00000030637	ENSELUP00000007889	Transmembrane protein 41B.	Chondrolectin.	0.560