(37 nodes) Cytosolic large ribosomal subunit network (Esox lucius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPL5	Ribosomal protein L5. (301 aa)
	rpl4	Ribosomal protein L4. (382 aa)
	rpl7l1	Ribosomal protein L7-like 1. (249 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (260 aa)
	rpl14	Ribosomal protein L14. (154 aa)
	rpl17	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (186 aa)
	rpl7a	Ribosomal protein L7a. (266 aa)
	LOC105024444	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	rpl28	Ribosomal protein L28. (137 aa)
	RPL35	Ribosomal protein L35. (138 aa)
	RPL37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	rpl30	Ribosomal protein L30. (132 aa)
	LOC105008443	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (209 aa)
	rpl6	Ribosomal protein L6. (259 aa)
	LOC105021206	Uncharacterized protein. (1133 aa)
	rpl37a	Ribosomal protein L37a. (68 aa)
	LOC105026211	Ubiquitin-like domain-containing protein. (128 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	rpl18	Ribosomal protein L18. (188 aa)
	ENSELUP00000016782	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	rpl23a	Ribosomal protein L23a. (196 aa)
	LOC105008943	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (479 aa)
	LOC105024009	Ribosomal protein L5. (298 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	rpl35	Uncharacterized protein. (153 aa)
	rpl10	Ribosomal_L16 domain-containing protein. (215 aa)
	LOC105006097	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	LOC105008159	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (146 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (112 aa)
	RPLP2	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (93 aa)
	mrpl1	Mitochondrial ribosomal protein L1. (331 aa)
	RPL3L	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (412 aa)
	rpl7	60S ribosomal protein L7. (245 aa)
	LOC105024418	60S ribosomal protein L26. (145 aa)
	rpl27a	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (148 aa)

Your Current Organism:

Esox lucius

NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSELUP00000016782	LOC105006097	ENSELUP00000016782	ENSELUP00000043020	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.993
ENSELUP00000016782	LOC105008159	ENSELUP00000016782	ENSELUP00000042318	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.995
ENSELUP00000016782	LOC105008443	ENSELUP00000016782	ENSELUP00000029380	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.994
ENSELUP00000016782	LOC105008943	ENSELUP00000016782	ENSELUP00000019494	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.995
ENSELUP00000016782	LOC105021206	ENSELUP00000016782	ENSELUP00000032580	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Uncharacterized protein.	0.981
ENSELUP00000016782	LOC105024009	ENSELUP00000016782	ENSELUP00000019776	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L5.	0.996
ENSELUP00000016782	LOC105024418	ENSELUP00000016782	ENSELUP00000004191	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L26.	0.999
ENSELUP00000016782	LOC105024444	ENSELUP00000016782	ENSELUP00000021935	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.993
ENSELUP00000016782	LOC105026211	ENSELUP00000016782	ENSELUP00000034480	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ubiquitin-like domain-containing protein.	0.993
ENSELUP00000016782	RPL19	ENSELUP00000016782	ENSELUP00000037395	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.994
ENSELUP00000016782	RPL35	ENSELUP00000016782	ENSELUP00000000393	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L35.	0.994
ENSELUP00000016782	RPL37	ENSELUP00000016782	ENSELUP00000000845	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.993
ENSELUP00000016782	RPL3L	ENSELUP00000016782	ENSELUP00000006662	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family.	0.995
ENSELUP00000016782	RPL5	ENSELUP00000016782	ENSELUP00000001425	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L5.	0.996
ENSELUP00000016782	RPLP2	ENSELUP00000016782	ENSELUP00000041241	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.995
ENSELUP00000016782	mrpl1	ENSELUP00000016782	ENSELUP00000013234	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Mitochondrial ribosomal protein L1.	0.957
ENSELUP00000016782	rpl10	ENSELUP00000016782	ENSELUP00000021600	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal_L16 domain-containing protein.	0.999
ENSELUP00000016782	rpl12	ENSELUP00000016782	ENSELUP00000020757	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999
ENSELUP00000016782	rpl14	ENSELUP00000016782	ENSELUP00000025862	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L14.	0.999
ENSELUP00000016782	rpl17	ENSELUP00000016782	ENSELUP00000025726	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999